| Package Name | Access | Summary | Updated |
|---|---|---|---|
| crisprlungo | public | A software pipeline for analyzing single-anchor amplicon sequencing and quantifying complex genome editing outcomes | 2025-04-22 |
| squigulator | public | A tool for simulating nanopore raw signal data | 2025-04-22 |
| pydmtools | public | A python extension written in C for quick access to DNA methylation DM files. | 2025-04-22 |
| kitsune | public | kitsune | 2025-04-22 |
| cladeomatic | public | Clade-O-Matic: Automatic recognition of population structures based on canonical SNPs | 2025-04-22 |
| tolkein | public | Tree of Life Kit of Evolutionary Informatics Novelties | 2025-04-22 |
| kgwasflow | public | kGWASflow is a Snakemake workflow for performing k-mers-based GWAS. | 2025-04-22 |
| hybkit | public | Hybkit toolkit and Python3 API chimeric genomic data analysis from proximity ligation methods. | 2025-04-22 |
| pbjasmine | public | jasmine | 2025-04-22 |
| msweep | public | mSWEEP - bacterial community composition estimation from pseudoalignments | 2025-04-22 |
| sourcepredict | public | Classification and prediction of the origin of metagenomic samples. | 2025-04-22 |
| cellsnake | public | cellsnake, a user-friendly tool for single cell RNA sequencing analysis | 2025-04-22 |
| samcut | public | samcut is `cut` for sam. Select (cut) columns from the output of `samtools view` using human-readale field names. | 2025-04-22 |
| superdsm | public | SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond. | 2025-04-22 |
| pbfusion | public | Fusion gene detection tool for PacBio Iso-Seq data | 2025-04-22 |
| pyctv_taxonomy | public | pyctv_taxonomy: download and use the ICTV Virus Metadata Resource | 2025-04-22 |
| milonga | public | MiLongA - A snakemake workflow for Microbial Long-read Assembly | 2025-04-22 |
| drprg | public | Drug resistance prediction with reference graphs | 2025-04-22 |
| brooklyn_plot | public | Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data | 2025-04-22 |
| qiskit-xyz2pdb | public | qiskit-xyz2pdb | 2025-04-22 |
| ffgc | public | Family Free Genome Comparison (FFGC) workflow | 2025-04-22 |
| bamstats | public | A command line tool to compute mapping statistics from a BAM file | 2025-04-22 |
| viralflye | public | viralFlye is a pipeline to recover high-quality viral genomes from long-read metagenomic sequencing. | 2025-04-22 |
| varvamp | public | Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses. | 2025-04-22 |
| fastquast | public | Fast and simple Quality Assessment Tool for Large Genomes | 2025-04-22 |
