| Package Name | Access | Summary | Updated |
|---|---|---|---|
| rmats-long | public | rMATS-long is an integrated computational workflow for long-read RNA-seq data | 2025-04-22 |
| deeplcretrainer | public | Evaluating DeepLC performance and retraining prediction models. | 2025-04-22 |
| braker3 | public | BRAKER3 is the latest pipeline in the BRAKER suite | 2025-04-22 |
| hiphase | public | Small and structural variant phasing tool for PacBio HiFi reads | 2025-04-22 |
| seqverify | public | Seqverify analyzes whole genome sequencing data for gene-editing verification. | 2025-04-22 |
| fununifrac | public | A repository to implement UniFrac, but on functional profiles of metagenomic data. | 2025-04-22 |
| spagrn | public | A comprehensive tool to infer TF-centered, spatial gene regulatory networks for the spatially resolved transcriptomics (SRT) data. | 2025-04-22 |
| crussmap | public | crussmap is a faster tool to convert genome coordinates between difference reference assemblies. | 2025-04-22 |
| minibusco | public | minibusco: a faster and more accurate reimplementation of BUSCO | 2025-04-22 |
| perl-bio-phylo-forest-dbtree | public | DBIx::Class-backed, Bio::Phylo-like API for large phylogenies. | 2025-04-22 |
| t1dgrs2 | public | Generate a Type 1 Diabetes Genetic Risk Score (T1D GRS) that accounts for interactions between HLA DR-DQ risk haplotypes. | 2025-04-22 |
| julia-divand | public | Performs an n-dimensional variational analysis/gridding of arbitrarily located observations | 2025-04-22 |
| upd | public | Simple software to call UPD regions from germline exome/wgs trios. | 2025-04-22 |
| umicollapse | public | Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). | 2025-04-22 |
| longreadsum | public | Long read sequencing data quality control tool | 2025-04-22 |
| r-proteus-bartongroup | public | R package for analysing proteomics data | 2025-04-22 |
| mlgenotype | public | A package with utilities for training random forest classifiers to recognize SVs in short read datasets | 2025-04-22 |
| m6anet | public | m6anet is a python package for detection of m6a modifications from Nanopore direct RNA sequencing data. | 2025-04-22 |
| ngsngs | public | NGSNGS: Next Generation Simulator for Next Generation Sequencing data | 2025-04-22 |
| crisprlungo | public | A software pipeline for analyzing single-anchor amplicon sequencing and quantifying complex genome editing outcomes | 2025-04-22 |
| squigulator | public | A tool for simulating nanopore raw signal data | 2025-04-22 |
| pydmtools | public | A python extension written in C for quick access to DNA methylation DM files. | 2025-04-22 |
| kitsune | public | kitsune | 2025-04-22 |
| cladeomatic | public | Clade-O-Matic: Automatic recognition of population structures based on canonical SNPs | 2025-04-22 |
| tolkein | public | Tree of Life Kit of Evolutionary Informatics Novelties | 2025-04-22 |
