| Package Name | Access | Summary | Updated |
|---|---|---|---|
| tksm | public | Very modular, very cool long-read transcriptomic simulator | 2025-04-22 |
| gfflu | public | Annotate Influenza A virus gene segment sequences and output GFF3 files. | 2025-04-22 |
| naibr-plus | public | Identify novel adjacencies created by structural variations using linked-read data | 2025-04-22 |
| vcf2circos | public | A python package based on Plotly to help generate Circos plots from a VCF file or a JSON configuration file. | 2025-04-22 |
| perl-bio-bpwrapper | public | Bio::BPWrapper -- command-line utilities for Bio::Perl | 2025-04-22 |
| isoseq | public | Iso-Seq - Scalable De Novo Isoform Discovery | 2025-04-22 |
| tciaclient | public | TCIA (The Cancer Imaging Archive) Download Client for Python | 2025-04-22 |
| odamnet | public | Study molecular relationships between chemicals and rare diseases | 2025-04-22 |
| metabuli | public | Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid | 2025-04-22 |
| repic | public | REPIC - an ensemble learning approach to cryo-EM particle picking. | 2025-04-22 |
| perl-retroseq | public | RetroSeq: discovery and genotyping of TEVs from reads in BAM format. | 2025-04-22 |
| abromics_galaxy_json_extractor | public | Tool to convert Galaxy AMR output to abromics project | 2025-04-22 |
| genoflu | public | Influenza data pipeline to automate genotyping assignment. | 2025-04-22 |
| pdivas | public | PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing | 2025-04-22 |
| cpc2 | public | Coding Potential Calculator 2 (CPC2) | 2025-04-22 |
| nrpys | public | Python language bindings for nrps-rs substrate specificity predictor. | 2025-04-22 |
| annonars | public | Genome annotation based on Rust and RocksDB. | 2025-04-22 |
| matchmsextras | public | Additional network analysis functions for matchms | 2025-04-22 |
| panfeed | public | Compute gene-cluster specific k-mers over a pangenome | 2025-04-22 |
| callingcardstools | public | An API and collection of cmd line tools to work with calling cards sequencing data | 2025-04-22 |
| methphaser | public | MethPhaser: methylation-based haplotype phasing of human genomes | 2025-04-22 |
| hificnv | public | Copy number variant caller and depth visualization utility for PacBio HiFi reads | 2025-04-22 |
| r-ccqtl | public | CCQTL is a wrapper around the R/qtl2 (Broman et al, Genetics 2019 10.1534/genetics.118.301595) functions, with hard-coded parameters tailored for QTL mapping in the Collaborative Cross. | 2025-04-22 |
| quickbam | public | Parallel BAM file access API for high throughput sequence analysis informatics | 2025-04-22 |
| brawn | public | A tool for handling repetitive insertions into sequence alignments. | 2025-04-22 |
