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bioconductor-starbiotrek
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public |
StarBioTrek
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2025-04-22 |
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bioconductor-spidermir
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public |
SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
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2025-04-22 |
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bioconductor-tcgabiolinks
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public |
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
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2025-04-22 |
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bioconductor-basecallqc
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public |
Working with Illumina Basecalling and Demultiplexing input and output files
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2025-04-22 |
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bioconductor-dss
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public |
Dispersion shrinkage for sequencing data
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2025-04-22 |
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bioconductor-imas
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public |
Integrative analysis of Multi-omics data for Alternative Splicing
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2025-04-22 |
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bioconductor-flowploidy
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public |
Analyze flow cytometer data to determine sample ploidy
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2025-04-22 |
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bioconductor-ivas
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public |
Identification of genetic Variants affecting Alternative Splicing
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2025-04-22 |
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bioconductor-rnaither
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public |
Statistical analysis of high-throughput RNAi screens
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2025-04-22 |
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bioconductor-rankprod
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public |
Rank Product method for identifying differentially expressed genes with application in meta-analysis
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2025-04-22 |
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bioconductor-scnorm
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public |
Normalization of single cell RNA-seq data
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2025-04-22 |
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bioconductor-ideal
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public |
Interactive Differential Expression AnaLysis
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2025-04-22 |
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bioconductor-motifcounter
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public |
R package for analysing TFBSs in DNA sequences
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2025-04-22 |
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r-tcga2stat
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public |
Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.
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2025-04-22 |
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r-adegenet
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public |
Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
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2025-04-22 |
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r-gwpcr
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public |
Implements the necessary distributions and parameter estimation procedures for a model of amplification and high-troughput sequencing. The model is based on a mechanistic model of PCR amplification as a Galton-Watson branching process, and on Poissonan sampling to model high-throughput sequencing.
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2025-04-22 |
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bioconductor-sc3
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public |
Single-Cell Consensus Clustering
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2025-04-22 |
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bioconductor-genomeintervals
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public |
Operations on genomic intervals
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2025-04-22 |
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biolite
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public |
A lightweight bioinformatics framework with automated tracking of diagnostics and provenance.
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2025-04-22 |
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bioconductor-rtcga.mrna
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public |
mRNA datasets from The Cancer Genome Atlas Project
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2025-04-22 |
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bioconductor-rtcga
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public |
The Cancer Genome Atlas Data Integration
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2025-04-22 |
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bioconductor-genefu
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public |
Computation of Gene Expression-Based Signatures in Breast Cancer
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2025-04-22 |
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bioconductor-cancersubtypes
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public |
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
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2025-04-22 |
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bioconductor-srap
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public |
Simplified RNA-Seq Analysis Pipeline
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2025-04-22 |
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bioconductor-baalchip
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public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
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2025-04-22 |
