| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-snm | public | Supervised Normalization of Microarrays | 2025-04-22 |
| bioconductor-sigfuge | public | SigFuge | 2025-04-22 |
| bioconductor-simat | public | GC-SIM-MS data processing and alaysis tool | 2025-04-22 |
| r-canopy | public | A statistical framework and computational procedure for identifying the sub-populations within a tumor, determining the mutation profiles of each subpopulation, and inferring the tumor's phylogenetic history. The input are variant allele frequencies (VAFs) of somatic single nucleotide alterations (SNAs) along with allele-specific coverage ratios between the tumor and matched normal sample for somatic copy number alterations (CNAs). These quantities can be directly taken from the output of existing software. Canopy provides a general mathematical framework for pooling data across samples and sites to infer the underlying parameters. For SNAs that fall within CNA regions, Canopy infers their temporal ordering and resolves their phase. When there are multiple evolutionary configurations consistent with the data, Canopy outputs all configurations along with their confidence assessment. | 2025-04-22 |
| bioconductor-sigar | public | Statistics for Integrative Genomics Analyses in R | 2025-04-22 |
| bioconductor-reactomepa | public | Reactome Pathway Analysis | 2025-04-22 |
| bioconductor-reactome.db | public | A set of annotation maps for reactome | 2025-04-22 |
| bioconductor-slgi | public | Synthetic Lethal Genetic Interaction | 2025-04-22 |
| bioconductor-scisi | public | In Silico Interactome | 2025-04-22 |
| bioconductor-apcomplex | public | Estimate protein complex membership using AP-MS protein data | 2025-04-22 |
| bioconductor-org.sc.sgd.db | public | Genome wide annotation for Yeast | 2025-04-22 |
| bioconductor-rpsixml | public | R interface to PSI-MI 2.5 files | 2025-04-22 |
| bioconductor-cnvgsa | public | Gene Set Analysis of (Rare) Copy Number Variants | 2025-04-22 |
| bioconductor-lola | public | Locus overlap analysis for enrichment of genomic ranges | 2025-04-22 |
| bioconductor-logitt | public | logit-t Package | 2025-04-22 |
| bioconductor-drivernet | public | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer | 2025-04-22 |
| bioconductor-dupchecker | public | a package for checking high-throughput genomic data redundancy in meta-analysis | 2025-04-22 |
| bioconductor-dyebias | public | The GASSCO method for correcting for slide-dependent gene-specific dye bias | 2025-04-22 |
| bioconductor-dyndoc | public | Dynamic document tools | 2025-04-22 |
| bioconductor-dta | public | Dynamic Transcriptome Analysis | 2025-04-22 |
| bioconductor-ebsea | public | Exon Based Strategy for Expression Analysis of genes | 2025-04-22 |
| bioconductor-mmdiff2 | public | Statistical Testing for ChIP-Seq data sets | 2025-04-22 |
| bioconductor-mlseq | public | Machine Learning Interface for RNA-Seq Data | 2025-04-22 |
| bioconductor-orderedlist | public | Similarities of Ordered Gene Lists | 2025-04-22 |
| bioconductor-geneplast | public | Evolutionary and plasticity analysis of orthologous groups | 2025-04-22 |
