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bioconductor-chipseqspike
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public |
ChIP-Seq data scaling according to spike-in control
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2025-04-22 |
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bioconductor-seqplots
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public |
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps
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2025-04-22 |
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bioconductor-trnascanimport
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public |
Importing a tRNAscan-SE result file as GRanges object
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2025-04-22 |
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bioconductor-plyranges
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public |
A fluent interface for manipulating GenomicRanges
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2025-04-22 |
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bioconductor-funcisnp.data
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public |
Various data sets for use with the FunciSNP package
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2025-04-22 |
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bioconductor-excluster
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public |
ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition
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2025-04-22 |
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bioconductor-lowmaca
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public |
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
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2025-04-22 |
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bioconductor-biocsklearn
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public |
interface to python sklearn via Rstudio reticulate
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2025-04-22 |
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bioconductor-ctrap
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public |
Identification of candidate causal perturbations from differential gene expression data
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2025-04-22 |
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bioconductor-siamcat
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public |
Statistical Inference of Associations between Microbial Communities And host phenoTypes
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2025-04-22 |
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bioconductor-rjmcmcnucleosomes
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public |
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
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2025-04-22 |
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bioconductor-dmchmm
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public |
Differentially Methylated CpG using Hidden Markov Model
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2025-04-22 |
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bioconductor-decontam
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public |
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
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2025-04-22 |
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bioconductor-coverageview
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public |
Coverage visualization package for R
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2025-04-22 |
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bioconductor-chromswitch
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public |
An R package to detect chromatin state switches from epigenomic data
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2025-04-22 |
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bioconductor-sponge
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public |
Sparse Partial Correlations On Gene Expression
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2025-04-22 |
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bioconductor-genesis
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public |
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
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2025-04-22 |
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bioconductor-seqvartools
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public |
Tools for variant data
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2025-04-22 |
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bioconductor-ddpcrclust
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public |
Clustering algorithm for ddPCR data
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2025-04-22 |
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bioconductor-tronco
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public |
TRONCO, an R package for TRanslational ONCOlogy
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2025-04-22 |
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r-qpcr
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public |
Model fitting, optimal model selection and calculation of various features that are essential in the analysis of quantitative real-time polymerase chain reaction (qPCR).
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2025-04-22 |
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bioconductor-gwasdata
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public |
Data used in the examples and vignettes of the GWASTools package
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2025-04-22 |
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bioconductor-gwastools
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public |
Tools for Genome Wide Association Studies
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2025-04-22 |
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r-grbase
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public |
The 'gRbase' package provides graphical modelling features used by e.g. the packages 'gRain', 'gRim' and 'gRc'. 'gRbase' implements graph algorithms including (i) maximum cardinality search (for marked and unmarked graphs). (ii) moralization, (iii) triangulation, (iv) creation of junction tree. 'gRbase' facilitates array operations, 'gRbase' implements functions for testing for conditional independence. 'gRbase' illustrates how hierarchical log-linear models may be implemented and describes concept of graphical meta data. The facilities of the package are documented in the book by Højsgaard, Edwards and Lauritzen (2012, <doi:10.1007/978-1-4614-2299-0>) and in the paper by Dethlefsen and Højsgaard, (2005, <doi:10.18637/jss.v014.i17>). Please see 'citation("gRbase")' for citation details. NOTICE 'gRbase' requires that the packages graph, 'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for installation instructions please refer to the web page given below.
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2025-04-22 |
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bioconductor-netresponse
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public |
Functional Network Analysis
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2025-04-22 |
