bioconda / packages / bioconductor-ctrap 1.6.0

Identification of candidate causal perturbations from differential gene expression data

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-ctrap
conda install -c bioconda/label/gcc7 bioconductor-ctrap

Description

Compare differential gene expression results with those from known cellular perturbations (such as gene knock-down, overexpression or small molecules) derived from the Connectivity Map. Such analyses allow not only to infer the molecular causes of the observed difference in gene expression but also to identify small molecules that could drive or revert specific transcriptomic alterations.

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