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bioconductor-ceu1kgv
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public |
expression + genotype on 79 unrelated CEU individuals
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2025-04-22 |
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bioconductor-clipper
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public |
Gene Set Analysis Exploiting Pathway Topology
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2025-04-22 |
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bioconductor-geneanswers
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public |
Integrated Interpretation of Genes
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2025-04-22 |
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bioconductor-pigengene
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public |
Infers biological signatures from gene expression data
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2025-04-22 |
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bioconductor-mcbiclust
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public |
Massive correlating biclusters for gene expression data and associated methods
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2025-04-22 |
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bioconductor-fastliquidassociation
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public |
functions for genome-wide application of Liquid Association
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2025-04-22 |
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bioconductor-randomwalkrestartmh
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public |
Random walk with restart on multiplex and heterogeneous Networks
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2025-04-22 |
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r-dnet
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public |
The focus of the dnet by Fang and Gough (2014) <doi:10.1186/s13073-014-0064-8> is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
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2025-04-22 |
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bioconductor-appreci8r
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public |
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
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2025-04-22 |
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r-rsnps
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public |
A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), and 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP>). Functions are included for searching for 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.
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2025-04-22 |
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bioconductor-metnet
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public |
Inferring metabolic networks from untargeted high-resolution mass spectrometry data
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2025-04-22 |
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bioconductor-zebrafishprobe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Zebrafish\_probe\_tab.
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2025-04-22 |
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bioconductor-zebrafishcdf
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public |
A package containing an environment representing the Zebrafish.cdf file.
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2025-04-22 |
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bioconductor-zebrafish.db0
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public |
Base Level Annotation databases for zebrafish
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2025-04-22 |
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bioconductor-zebrafish.db
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public |
Affymetrix Affymetrix Zebrafish Array annotation data (chip zebrafish)
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2025-04-22 |
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bioconductor-ygs98probe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\_probe\_tab.
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2025-04-22 |
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bioconductor-ygs98cdf
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public |
A package containing an environment representing the YG_S98.cdf file.
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2025-04-22 |
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bioconductor-ygs98.db
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public |
Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98)
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2025-04-22 |
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bioconductor-yeast2probe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Yeast\_2\_probe\_tab.
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2025-04-22 |
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bioconductor-yeast2cdf
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public |
A package containing an environment representing the Yeast_2.cdf file.
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2025-04-22 |
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bioconductor-yeast2.db
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public |
Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2)
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2025-04-22 |
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bioconductor-yeast.db0
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public |
Base Level Annotation databases for yeast
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2025-04-22 |
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bioconductor-ye6100subdcdf
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public |
A package containing an environment representing the Ye6100subD.CDF file.
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2025-04-22 |
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bioconductor-ye6100subccdf
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public |
A package containing an environment representing the Ye6100subC.CDF file.
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2025-04-22 |
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bioconductor-ye6100subbcdf
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public |
A package containing an environment representing the Ye6100subB.CDF file.
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2025-04-22 |
