bioconda / packages / bioconductor-appreci8r 1.6.0

appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-appreci8r
conda install -c bioconda/label/gcc7 bioconductor-appreci8r

Description

The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard appreci8-tools (GATK, Platypus, VarScan, FreeBayes, LoFreq, SNVer, samtools and VarDict), as well as up to 5 additional tools is combined, evaluated and filtered.

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