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bioconductor-mzr
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public |
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
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2024-12-18 |
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pysam
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public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
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2024-12-18 |
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bioconductor-matter
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public |
Out-of-core statistical computing and signal processing
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2024-12-18 |
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bioconductor-mzid
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public |
An mzIdentML parser for R
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2024-12-18 |
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lastz
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public |
LASTZ is a program for aligning DNA sequences, a pairwise aligner.
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2024-12-18 |
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bioconductor-protgenerics
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public |
Generic infrastructure for Bioconductor mass spectrometry packages
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2024-12-18 |
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rnashapes
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public |
RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space.
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2024-12-18 |
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pkiss
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public |
RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots.
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2024-12-18 |
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bioconductor-seqtools
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public |
Analysis of nucleotide, sequence and quality content on fastq files
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2024-12-18 |
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minimap2
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public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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2024-12-18 |
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bioconductor-snpstats
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public |
SnpMatrix and XSnpMatrix classes and methods
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2024-12-18 |
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cortexpy
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public |
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
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2024-12-18 |
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bioconductor-affy
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public |
Methods for Affymetrix Oligonucleotide Arrays
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2024-12-18 |
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bioconductor-multtest
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public |
Resampling-based multiple hypothesis testing
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2024-12-18 |
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bioconductor-hem
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public |
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
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2024-12-18 |
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bioconductor-mulcom
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public |
Calculates Mulcom test
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2024-12-18 |
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bioconductor-yeastexpdata
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public |
Yeast Experimental Data
|
2024-12-18 |
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bioconductor-hopach
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public |
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
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2024-12-18 |
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bioconductor-snagee
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public |
Signal-to-Noise applied to Gene Expression Experiments
|
2024-12-18 |
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bioconductor-curatedovariandata
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public |
Clinically Annotated Data for the Ovarian Cancer Transcriptome
|
2024-12-18 |
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bioconductor-qcmetrics
|
public |
A Framework for Quality Control
|
2024-12-18 |
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bioconductor-lmdme
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public |
Linear Model decomposition for Designed Multivariate Experiments
|
2024-12-18 |
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bioconductor-multiscan
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public |
R package for combining multiple scans
|
2024-12-18 |
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bioconductor-golubesets
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public |
exprSets for golub leukemia data
|
2024-12-18 |
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bioconductor-cellmapper
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public |
Predict genes expressed selectively in specific cell types
|
2024-12-18 |
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bioconductor-pcamethods
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public |
A collection of PCA methods
|
2024-12-18 |
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bioconductor-ibh
|
public |
Interaction Based Homogeneity for Evaluating Gene Lists
|
2024-12-18 |
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bioconductor-ebarrays
|
public |
Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification
|
2024-12-18 |
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bioconductor-fabia
|
public |
FABIA: Factor Analysis for Bicluster Acquisition
|
2024-12-18 |
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bioconductor-twilight
|
public |
Estimation of local false discovery rate
|
2024-12-18 |
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bioconductor-ruvnormalizedata
|
public |
Gender data for the RUVnormalize package
|
2024-12-18 |
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bioconductor-bioqc
|
public |
Detect tissue heterogeneity in expression profiles with gene sets
|
2024-12-18 |
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bioconductor-graphat
|
public |
Graph Theoretic Association Tests
|
2024-12-18 |
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bioconductor-rnaseqsamplesizedata
|
public |
RnaSeqSampleSizeData
|
2024-12-18 |
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bioconductor-fishalyser
|
public |
FISHalyseR a package for automated FISH quantification
|
2024-12-18 |
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bioconductor-rots
|
public |
Reproducibility-Optimized Test Statistic
|
2024-12-18 |
|
molpopgen-analysis
|
public |
Programs for the (pre-NGS-era) analysis of population-genetic data
|
2024-12-18 |
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bioconductor-yeastcc
|
public |
Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data
|
2024-12-18 |
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bioconductor-bladderbatch
|
public |
Bladder gene expression data illustrating batch effects
|
2024-12-18 |
|
bioconductor-all
|
public |
A data package
|
2024-12-18 |
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bioconductor-hypergraph
|
public |
A package providing hypergraph data structures
|
2024-12-18 |
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bioconductor-arrmnormalization
|
public |
Adaptive Robust Regression normalization for Illumina methylation data
|
2024-12-18 |
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bioconductor-rgraph2js
|
public |
Convert a Graph into a D3js Script
|
2024-12-18 |
|
bioconductor-rcy3
|
public |
Functions to Access and Control Cytoscape
|
2024-12-18 |
|
bioconductor-keggdzpathwaysgeo
|
public |
KEGG Disease Datasets from GEO
|
2024-12-18 |
|
bioconductor-rbcbook1
|
public |
Support for Springer monograph on Bioconductor
|
2024-12-18 |
|
canu
|
public |
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing.
|
2024-12-17 |
|
trimadap
|
public |
Fast but inaccurate adapter trimmer for Illumina reads.
|
2024-12-17 |
|
alignstats
|
public |
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
|
2024-12-17 |
|
flye
|
public |
A fast and accurate de novo assembler for single molecule sequencing reads using repeat graphs.
|
2024-12-17 |
