| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-m3drop | public | Michaelis-Menten Modelling of Dropouts in single-cell RNASeq | 2025-04-22 |
| prosolo | public | A highly sensitive and accurate Bayesian caller for variants in single cell sequencing data. | 2025-04-22 |
| bioconductor-snpstats | public | SnpMatrix and XSnpMatrix classes and methods | 2025-04-22 |
| monovar | public | single cell joint genotyper | 2025-04-22 |
| shiver | public | SHIVER - Sequences from HIV Easily Reconstructed | 2025-04-22 |
| bioconductor-stringdb | public | STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis | 2025-04-22 |
| irep | public | calculate iRep replication rates from metagenome sequencing | 2025-04-22 |
| haystack_bio | public | Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline | 2025-04-22 |
| irfinder | public | Intron Retention Finder | 2025-04-22 |
| singlecell-barcodes | public | whitelisted singlecell barcodes and information regarding where molecular/sample/cellular barcodes are in each read, for various singlecell protocols | 2025-04-22 |
| gff3toembl | public | Submitting annotated genomes to EMBL is a very difficult and time consuming process. This software converts GFF3 files from the most commonly use prokaryote annotation tool Prokka into a format that is suitable for submission to EMBL. It has been used to prepare more than 30% of all annotated genomes in EMBL/GenBank. | 2025-04-22 |
| midas | public | An integrated pipeline for estimating strain-level genomic variation from metagenomic data | 2025-04-22 |
| hs-blastn | public | hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner. | 2025-04-22 |
| gqt | public | GQT is a genotype query interface. | 2025-04-22 |
| pizzly | public | Fast fusion detection using kallisto | 2025-04-22 |
| mqc | public | qualtiy control tool to assess the mapping quality of a ribosome profiling experiment | 2025-04-22 |
| r-rcpptoml | public | The configuration format defined by 'TOML' (which expands to "Tom's Obvious Markup Language") specifies an excellent format (described at <https | 2025-04-22 |
| sonlib | public | Small general purpose library for C and Python with focus on bioinformatics. | 2025-04-22 |
| ont-fast5-api | public | Oxford Nanopore Technologies fast5 API software | 2025-04-22 |
| je-suite | public | Je is a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs | 2025-04-22 |
| bioconductor-consensusclusterplus | public | ConsensusClusterPlus | 2025-04-22 |
| pauvre | public | Tools for plotting Oxford Nanopore and other long-read data. | 2025-04-22 |
| nanosplit | public | Perform splitting of Oxford Nanopore sequencing data in a fail and pass dataset. | 2025-04-22 |
| bioconductor-signer | public | Empirical Bayesian approach to mutational signature discovery | 2025-04-22 |
| nanoplotter | public | Plotting functions of Oxford Nanopore sequencing data for NanoPack | 2025-04-22 |
