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embl-api-validator
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public |
ENA flat file validator for submission
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2025-04-22 |
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nanostat
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public |
Calculate statistics for Oxford Nanopore sequencing data and alignments
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2025-04-22 |
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nanoget
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public |
Functions to extract information from Oxford Nanopore sequencing data and alignments.
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2025-04-22 |
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nanomath
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public |
A few simple math function for other Oxford Nanopore processing scripts
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2025-04-22 |
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bioconductor-all
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public |
A data package
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2025-04-22 |
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r-exactranktests
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public |
Computes exact conditional p-values and quantiles using an implementation of the Shift-Algorithm by Streitberg & Roehmel.
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2025-04-22 |
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r-kmsurv
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public |
Data sets and functions for Klein and Moeschberger (1997), "Survival Analysis, Techniques for Censored and Truncated Data", Springer.
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2025-04-22 |
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r-km.ci
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public |
Computes various confidence intervals for the Kaplan-Meier estimator, namely Petos CI, Rothman CI, CI's based on Greenwoods variance, Thomas and Grunkemeier CI and the simultaneous confidence bands by Nair and Hall and Wellner.
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2025-04-22 |
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r-matlab
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public |
Emulate MATLAB code using R.
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2025-04-22 |
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r-downloader
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public |
Provides a wrapper for the download.file function, making it possible to download files over HTTPS on Windows, Mac OS X, and other Unix-like platforms. The RCurl package provides this functionality (and much more) but can be difficult to install because it must be compiled with external dependencies. This package has no external dependencies, so it is much easier to install.
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2025-04-22 |
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hera
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public |
hera is a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection.
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2025-04-22 |
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odose
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public |
Ortholog Direction of Selection Engine.
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2025-04-22 |
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merlin
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public |
MERLIN uses sparse trees to represent gene flow in pedigrees and is a fast pedigree analysis package
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2025-04-22 |
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spine
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public |
Identification of conserved nucleotide core genome of bacteria and other small genome organisms
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2025-04-22 |
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r-extrafont
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public |
Tools to using fonts other than the standard PostScript fonts. This package makes it easy to use system TrueType fonts and with PDF or PostScript output files, and with bitmap output files in Windows. extrafont can also be used with fonts packaged specifically to be used with, such as the fontcm package, which has Computer Modern PostScript fonts with math symbols. See https://github.com/wch/extrafont for instructions and examples.
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2025-04-22 |
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r-extrafontdb
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public |
Package for holding the database for the extrafont package
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2025-04-22 |
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r-rttf2pt1
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public |
Contains the program 'ttf2pt1', for use with the 'extrafont' package. This product includes software developed by the 'TTF2PT1' Project and its contributors.
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2025-04-22 |
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behst
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public |
BEHST reads an input dataset of chromosome regions, and intersects them with the chromatin interactions available in the Hi-C dataset. Of these chromosome regions, BEHST selects those that are presentthe regulatory regions of genes of APPRIS, a dataset of principal isoform annotations. We defined these cis-regulatory regions upon the position of their nearest transcription start site of the APPRIS genes' principal transcripts (obtained through GENCODE), plus an upstream and downstream extension. Afterwards, BEHST takes the genes of the resulting partner loci found in gene regulatory regions, and performs a gene set enrichment analysis on them through g:Profiler. BEHST, finally, outputs the list of the most significant Gene Ontology terms detected by g:Profiler. Citation: Davide Chicco, Haixin Sarah Bi, Juri Reimand, and Michael M. Hoffman, 'BEHST: Genomic set enrichment analysis enhanced through integration of chromatin long-range interactions', 2018. In preparation. Website: http://behst.hoffmanlab.org/
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2025-04-22 |
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vdjer
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public |
B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
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2025-04-22 |
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imseq
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public |
IMSEQ is a fast, PCR and sequencing error aware tool to analyze high throughput data from recombined T-cell receptor or immunoglobulin gene sequencing experiments
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2025-04-22 |
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nanosv
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public |
Structural variation detection tool for Oxford Nanopore data.
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2025-04-22 |
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helperlibs
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public |
A collection of bioinformatics-related helper functions
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2025-04-22 |
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pyquery
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public |
A jquery-like library for python
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2025-04-22 |
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adam
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public |
Genomics analysis platform built on Apache Avro, Apache Spark, and Apache Parquet
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2025-04-22 |
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ecopy
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public |
EcoPy: Ecological Data Analysis in Python
|
2025-04-22 |
