| Package Name | Access | Summary | Updated |
|---|---|---|---|
| sed | public | sed (stream editor) | 2025-04-22 |
| r-fdrtool | public | Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold. | 2025-04-22 |
| perl-text-soundex | public | Implementation of the soundex algorithm. | 2025-04-22 |
| rmblast | public | RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite. | 2025-04-22 |
| hicexplorer | public | Set of programs to process, analyze and visualize Hi-C and capture Hi-C data | 2025-04-22 |
| bioconductor-mzr | public | parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data) | 2025-04-22 |
| gawk | public | GNU awk | 2025-04-22 |
| poretools | public | poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore | 2025-04-22 |
| deeptools | public | A set of user-friendly tools for normalization and visualzation of deep-sequencing data | 2025-04-22 |
| snippy | public | Rapid bacterial SNP calling and core genome alignments | 2025-04-22 |
| libmagic | public | Implementation of the file(1) command | 2025-04-22 |
| setuptools_cython | public | Cython setuptools integration | 2025-04-22 |
| bioconductor-dexseq | public | Inference of differential exon usage in RNA-Seq | 2025-04-22 |
| tabulate | public | Pretty-print tabular data | 2025-04-22 |
| perl-time-hires | public | High resolution alarm, sleep, gettimeofday, interval timers | 2025-04-22 |
| perl-encode-locale | public | Determine the locale encoding | 2025-04-22 |
| mummer | public | MUMmer is a system for rapidly aligning entire genomes | 2025-04-22 |
| lofreq | public | A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data | 2025-04-22 |
| perl-gd | public | Perl interface to the gd2 graphics library | 2025-04-22 |
| bioconductor-rtracklayer | public | R interface to genome annotation files and the UCSC genome browser | 2025-04-22 |
| bioconductor-deseq2 | public | Differential gene expression analysis based on the negative binomial distribution | 2025-04-22 |
| bioconductor-rhdf5 | public | R Interface to HDF5 | 2025-04-22 |
| bioconductor-genomicranges | public | Representation and manipulation of genomic intervals | 2025-04-22 |
| bioconductor-genomeinfodb | public | Utilities for manipulating chromosome names, including modifying them to follow a particular naming style | 2025-04-22 |
| bioconductor-xvector | public | Foundation of external vector representation and manipulation in Bioconductor | 2025-04-22 |
