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bioconductor-lungexpression
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public |
ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper
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2024-12-18 |
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bioconductor-arrmnormalization
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public |
Adaptive Robust Regression normalization for Illumina methylation data
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2024-12-18 |
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bioconductor-rbioformats
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public |
R interface to Bio-Formats
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2024-12-18 |
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bioconductor-furrowseg
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public |
Furrow Segmentation
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2024-12-18 |
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bioconductor-rgraph2js
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public |
Convert a Graph into a D3js Script
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2024-12-18 |
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bioconductor-prostatecancertaylor
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public |
Prostate Cancer Data
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2024-12-18 |
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makehub
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public |
MakeHub is a command line tool for the fully automatic generation of of track data hubs for visualizing genomes with the UCSC genome browser.
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2024-12-18 |
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bioconductor-rcy3
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public |
Functions to Access and Control Cytoscape
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2024-12-18 |
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bioconductor-chemminedrugs
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public |
An annotation package for use with ChemmineR. This package includes data from DrugBank. DUD data can be downloaded using the "DUD()" function in ChemmineR.
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2024-12-18 |
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bioconductor-keggdzpathwaysgeo
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public |
KEGG Disease Datasets from GEO
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2024-12-18 |
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bioconductor-donapllp2013
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public |
Supplementary data package for Dona et al. (2013) containing example images and tables
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2024-12-18 |
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bioconductor-cancerdata
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public |
Development and validation of diagnostic tests from high-dimensional molecular data: Datasets
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2024-12-18 |
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bioconductor-rbcbook1
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public |
Support for Springer monograph on Bioconductor
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2024-12-18 |
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chain2paf
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public |
convert CHAIN format to PAF format
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2024-12-18 |
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echidna
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public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
|
2024-12-17 |
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canu
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public |
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing.
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2024-12-17 |
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kcounter
|
public |
A simple package for counting DNA k-mers in Python. Written in Rust.
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2024-12-17 |
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trimadap
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public |
Fast but inaccurate adapter trimmer for Illumina reads.
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2024-12-17 |
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btllib
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public |
Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab
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2024-12-17 |
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alignstats
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public |
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
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2024-12-17 |
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flye
|
public |
A fast and accurate de novo assembler for single molecule sequencing reads using repeat graphs.
|
2024-12-17 |
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open-cravat
|
public |
OpenCRAVAT - variant analysis toolkit
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2024-12-17 |
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evofr
|
public |
Tools for evolutionary forecasting
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2024-12-17 |
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pywgsim
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public |
pywgsim
|
2024-12-17 |
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r-whopgenome
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public |
Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
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2024-12-17 |
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el_gato
|
public |
Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies.
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2024-12-17 |
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mrbayes
|
public |
Bayesian Inference of Phylogeny
|
2024-12-17 |
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beagle-lib
|
public |
general purpose library for evaluating the likelihood of sequence evolution on trees
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2024-12-17 |
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trycycler
|
public |
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes
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2024-12-17 |
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bioconductor-dnacopy
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public |
DNA Copy Number Data Analysis
|
2024-12-17 |
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bioconductor-amountain
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public |
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
|
2024-12-17 |
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bellmans-gapc
|
public |
A language and compiler for algebraic dynamic programming.
|
2024-12-17 |
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bioconductor-cispath
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public |
Visualization and management of the protein-protein interaction networks.
|
2024-12-17 |
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bioconductor-flowpeaks
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public |
An R package for flow data clustering
|
2024-12-17 |
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bioconductor-gdsfmt
|
public |
R Interface to CoreArray Genomic Data Structure (GDS) Files
|
2024-12-17 |
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bioconductor-grenits
|
public |
Gene Regulatory Network Inference Using Time Series
|
2024-12-17 |
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bioconductor-fithic
|
public |
Confidence estimation for intra-chromosomal contact maps
|
2024-12-17 |
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bioconductor-hmmcopy
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public |
Copy number prediction with correction for GC and mappability bias for HTS data
|
2024-12-17 |
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bioconductor-genie3
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public |
GEne Network Inference with Ensemble of trees
|
2024-12-17 |
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bioconductor-biocparallel
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public |
Bioconductor facilities for parallel evaluation
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2024-12-17 |
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lofreq
|
public |
A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data
|
2024-12-17 |
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rmats
|
public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
|
2024-12-17 |
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bindash
|
public |
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
|
2024-12-17 |
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smudgeplot
|
public |
Inference of ploidy and heterozygosity structure using whole genome sequencing data.
|
2024-12-17 |
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pybbi
|
public |
Python bindings to UCSC Big Binary (bigWig/bigBed) file library
|
2024-12-17 |
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bioconductor-rbowtie
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public |
R bowtie wrapper
|
2024-12-17 |
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zol
|
public |
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters.
|
2024-12-17 |
|
k8
|
public |
Lightweight JavaScript shell based on Google's V8 JavaScript engine
|
2024-12-17 |
|
bioconductor-confessdata
|
public |
Example dataset for CONFESS package
|
2024-12-17 |
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bioconductor-cmap
|
public |
Annotation data file for cMAP assembled using data from public data repositories
|
2024-12-17 |
