| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fastq_utils | public | Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification. | 2025-06-18 |
| bioblend | public | A Python library for interacting with the Galaxy API. | 2025-06-18 |
| civicpy | public | CIViC variant knowledgebase analysis toolkit. | 2025-06-18 |
| sra-tools | public | The SRA Toolkit and SDK from NCBI. | 2025-06-18 |
| easel | public | Easel is an ANSI C code library for computational analysis of biological sequences using probabilistic models. | 2025-06-18 |
| r-isogene | public | Offers framework for testing for monotonic relationship between gene expression and doses in a microarray experiment. Several testing procedures including the global likelihood-ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations. | 2025-06-18 |
| msi | public | Metabarcoding sequences identification - from nanopore reads to taxa tables. | 2025-06-18 |
| lotus3 | public | LotuS3 is a lightweight amplicon sequencing pipeline supporting 16S/18S/ITS | 2025-06-18 |
| perl-xml-libxml | public | Interface to Gnome libxml2 xml parsing and DOM library | 2025-06-18 |
| poppunk | public | PopPUNK (POPulation Partitioning Using Nucleotide Kmers) | 2025-06-18 |
| perl-module-list | public | Module `directory' listing. | 2025-06-18 |
| perl-data-munge | public | Various utility functions. | 2025-06-18 |
| perl-alien-libxml2 | public | Installs the C libxml2 library on your system. | 2025-06-18 |
| perl-alien-build-plugin-download-gitlab | public | Alien::Build plugin to download from GitLab | 2025-06-18 |
| rtg-core | public | RealTimeGenomics Core -- Software for alignment and analysis of next-gen sequencing data. | 2025-06-18 |
| howdesbt | public | Sequence Bloom Tree, supporting determined/how split filters | 2025-06-18 |
| daisysuite | public | DaisySuite - mapping-based pipeline for horizontal gene transfer (HGT) detection using sequencing data | 2025-06-18 |
| perl-want | public | No Summary | 2025-06-18 |
| varlinker | public | Parallel threaded variant linker. | 2025-06-18 |
| ema | public | Fast & accurate alignment of barcoded short-reads | 2025-06-18 |
| plinder | public | PLINDER: The Protein-Ligand INteraction Dataset and Evaluation Resource. | 2025-06-18 |
| sak | public | This tool allows one to cut sequences and parts of sequences out of sequence files. | 2025-06-18 |
| maverick | public | Bayesian clustering for genetic data. | 2025-06-18 |
| madre | public | Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach. | 2025-06-18 |
| perl-ipc-cmd | public | A cross platform way of running (interactive) commandline programs. | 2025-06-18 |
