| Package Name | Access | Summary | Updated |
|---|---|---|---|
| biobb_pytorch | public | Biobb_pytorch is the Biobb module collection to create and train ML & DL models. | 2025-06-20 |
| biobb_pmx | public | Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. | 2025-06-20 |
| biobb_model | public | Biobb_model is the Biobb module collection to check and model 3d structures, create mutations or reconstruct missing atoms. | 2025-06-20 |
| demuxlet | public | Genetic multiplexing of barcoded single cell RNA-seq | 2025-06-19 |
| mzspeclib | public | HUPO-PSI Spectral library format | 2025-06-19 |
| stranger | public | Annotate VCF files with STR variants with pathogenicity implications. | 2025-06-19 |
| biobb_flexdyn | public | Biobb_flexdyn is a BioBB category for studies on the conformational landscape of native proteins. | 2025-06-19 |
| biobb_dna | public | Biobb_dna is a package composed of different analyses for nucleic acid trajectories. | 2025-06-19 |
| biobb_cp2k | public | Biobb_cp2k is a BioBB category for CP2K QM package. | 2025-06-19 |
| biobb_cmip | public | Biobb_cmip is the Biobb module collection to compute classical molecular interaction potentials. | 2025-06-19 |
| biobb_chemistry | public | Biobb_chemistry is the Biobb module collection to perform chemical conversions. | 2025-06-19 |
| ucsc-twobitinfo | public | Get information about sequences in a .2bit file. | 2025-06-19 |
| ucsc-fatotwobit | public | Convert DNA from fasta to 2bit format. | 2025-06-19 |
| ucsc-twobittofa | public | Convert all or part of .2bit file to fasta. | 2025-06-19 |
| biobb_amber | public | Biobb_amber is a BioBB category for AMBER MD package. | 2025-06-19 |
| r-recetox-waveica | public | Removal of batch effects for large-scale untargeted metabolomics data based on wavelet transform. | 2025-06-19 |
| libccp4 | public | Protein X-ray crystallography toolkit. | 2025-06-19 |
| ucsc-bedtobigbed | public | Convert bed file to bigBed. (BigBed version: 4) | 2025-06-19 |
| hymet2 | public | HYMET (Hybrid Metagenomic Tool) for taxonomic identification of metagenomic sequences. | 2025-06-19 |
| ppx | public | A Python interface to proteomics data repositories | 2025-06-19 |
| blastn2dotplots | public | A script for visualizing multiple dot-plot alignments from BLASTN output. | 2025-06-19 |
| perl-json-create | public | fast, minimal, UTF-8-only serialization of data to JSON | 2025-06-19 |
| yacht | public | YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI). | 2025-06-19 |
| cvlr | public | Clustering and Visualization of Long Reads | 2025-06-19 |
| fastq_utils | public | Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification. | 2025-06-18 |
