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porechop_abi
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public |
Adapter inferrence and removal of Oxford Nanopore reads
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2025-08-23 |
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enhjoerning
|
public |
A tool for computing statistics on short read alignments.
|
2025-08-22 |
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chromsize
|
public |
just get your chrom sizes
|
2025-08-22 |
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r-azimuth
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public |
Azimuth is a Shiny app demonstrating a query-reference mapping algorithm for single-cell data.
|
2025-08-22 |
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r-seurat-data
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public |
Single cell RNA sequencing datasets can be large, consisting of matrices that contain expression data for several thousand features across several thousand cells. This package is designed to easily install, manage, and learn about various single-cell datasets, provided Seurat objects and distributed as independent packages.
|
2025-08-22 |
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eviann
|
public |
Evidence-based eukaryotic genome annotation software.
|
2025-08-22 |
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r-seurat-disk
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public |
The h5Seurat file format is specifically designed for the storage and analysis of multi-modal single-cell and spatially-resolved expression experiments, for example, from CITE-seq or 10X Visium technologies. It holds all molecular information and associated metadata, including (for example) nearest-neighbor graphs, dimensional reduction information, spatial coordinates and image data, and cluster labels. We also support rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.
|
2025-08-22 |
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bioconductor-tfbstools
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public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis.
|
2025-08-22 |
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svclone
|
public |
Computational method for inferring cancer cell fraction of tumour SVs from WGS.
|
2025-08-22 |
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delve-bio
|
public |
A variant caller for mixed infections
|
2025-08-22 |
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bioconductor-cner
|
public |
CNE Detection and Visualization.
|
2025-08-22 |
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cactus-gfa-tools
|
public |
Command-line utilitites required for the Cactus Pangenome Pipeline.
|
2025-08-22 |
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alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2025-08-22 |
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skesa
|
public |
Strategic Kmer Extension for Scrupulous Assemblies & Sequence Assembly Using Target Enrichment
|
2025-08-21 |
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r-chromvarmotifs
|
public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
|
2025-08-21 |
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pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2025-08-21 |
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bioconductor-chromvar
|
public |
Chromatin Variation Across Regions.
|
2025-08-21 |
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arriba
|
public |
Fast and accurate gene fusion detection from RNA-Seq data.
|
2025-08-21 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-08-21 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-08-21 |
|
wally
|
public |
Visualization of aligned sequencing reads and genomic variants.
|
2025-08-21 |
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annotsv
|
public |
Annotation and Ranking of Structural Variation.
|
2025-08-21 |
|
dnaapler
|
public |
Reorients assembled microbial sequences
|
2025-08-21 |
|
twilight
|
public |
TWILIGHT: A high throughput tool for tall and wide multiple sequence alignment.
|
2025-08-21 |
|
esme_esmf_psmpi_5_12_1
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-21 |
