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cactus-gfa-tools
|
public |
Command-line utilitites required for the Cactus Pangenome Pipeline.
|
2025-08-22 |
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alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2025-08-22 |
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skesa
|
public |
Strategic Kmer Extension for Scrupulous Assemblies & Sequence Assembly Using Target Enrichment
|
2025-08-21 |
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r-chromvarmotifs
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public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
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2025-08-21 |
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pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2025-08-21 |
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bioconductor-chromvar
|
public |
Chromatin Variation Across Regions.
|
2025-08-21 |
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arriba
|
public |
Fast and accurate gene fusion detection from RNA-Seq data.
|
2025-08-21 |
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snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-08-21 |
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macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-08-21 |
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wally
|
public |
Visualization of aligned sequencing reads and genomic variants.
|
2025-08-21 |
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dnaapler
|
public |
Reorients assembled microbial sequences
|
2025-08-21 |
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twilight
|
public |
TWILIGHT: A high throughput tool for tall and wide multiple sequence alignment.
|
2025-08-21 |
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esme_esmf_psmpi_5_12_1
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-21 |
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esme_pnetcdf_psmpi_5_12_1
|
public |
PnetCDF - Parallel netCDF
|
2025-08-21 |
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esme_netcdf-c_psmpi_5_12_1
|
public |
NetCDF-C - netCDF interface for C
|
2025-08-21 |
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esme_hdf5_psmpi_5_12_1
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-08-21 |
|
esme_netcdf-fortran_psmpi_5_12_1
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-21 |
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esme_psmpi_5_12_1
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-08-21 |
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esme_omb_psmpi_5_12_1
|
public |
OSU Micro Benchmarks
|
2025-08-21 |
|
esme_pio_psmpi_5_12_1
|
public |
ParallelIO - High-level parallel I/O library
|
2025-08-21 |
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gxf2bed
|
public |
Fastest GTF/GFF-to-BED converter chilling around
|
2025-08-21 |
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btrim
|
public |
This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
|
2025-08-21 |
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mameshiba
|
public |
mameshiba installs only the dependencies needed to run MameShiba.
|
2025-08-21 |
|
shiba
|
public |
A versatile method for systematic identification of differential RNA splicing across platforms
|
2025-08-21 |
|
hmnillumina
|
public |
A parser for Illumina run
|
2025-08-21 |
