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esme_hdf5_openmpi_5_0_7
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-24 |
|
pantools
|
public |
PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes.
|
2025-02-24 |
|
macs3
|
public |
Model Based Analysis for ChIP-Seq data.
|
2025-02-24 |
|
squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
|
2025-02-24 |
|
irf
|
public |
Inverted Repeats Finder is a program that detects approximate inverted repeats.
|
2025-02-24 |
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seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-02-24 |
|
spades
|
public |
SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.
|
2025-02-23 |
|
taxmyphage
|
public |
Script to assign taxonomy to a bacteriophage at the genus and species level
|
2025-02-23 |
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annembed
|
public |
annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data
|
2025-02-22 |
|
seqerakit
|
public |
Automate creation of Seqera Platform resources
|
2025-02-22 |
|
ensembl-genomio
|
public |
Ensembl GenomIO - tools to convert basic genomic data into Ensembl cores and back to flatfile
|
2025-02-21 |
|
grz-cli
|
public |
Tool for validation, encryption and upload of MV submissions to GDCs.
|
2025-02-21 |
|
esme_omb_openmpi_5_0_6
|
public |
OSU Micro Benchmarks
|
2025-02-21 |
|
esme_netcdf-c_openmpi_5_0_6
|
public |
NetCDF-C - netCDF interface for C
|
2025-02-21 |
|
esme_esmf_openmpi_5_0_6
|
public |
ESMF - Earth System Modeling Framework
|
2025-02-21 |
|
esme_netcdf-fortran_openmpi_5_0_6
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-02-21 |
|
esme_pio_openmpi_5_0_6
|
public |
ParallelIO - High-level parallel I/O library
|
2025-02-21 |
|
esme_openmpi_5_0_6
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-02-21 |
|
esme_pnetcdf_openmpi_5_0_6
|
public |
PnetCDF - Parallel netCDF
|
2025-02-21 |
|
esme_hdf5_openmpi_5_0_6
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-21 |
|
ensembl-py
|
public |
Ensembl Python base library
|
2025-02-21 |
|
gapseq
|
public |
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
|
2025-02-21 |
|
deeplc
|
public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
|
2025-02-21 |
|
hmftools-neo
|
public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
|
2025-02-21 |
|
needletail
|
public |
Fast FASTX parsing in Python
|
2025-02-21 |
|
metacache
|
public |
MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.
|
2025-02-21 |
|
profile_dists
|
public |
Profile Dists: Rapid calcualtion of allele profile distances and distance base querying
|
2025-02-20 |
|
mgikit
|
public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2025-02-20 |
|
micomplete
|
public |
Quality control of assembled genomes
|
2025-02-20 |
|
icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
|
2025-02-20 |
|
scarap
|
public |
A toolkit for prokaryotic comparative genomics
|
2025-02-20 |
|
tbtamr
|
public |
A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL
|
2025-02-20 |
|
bioconductor-bambu
|
public |
Context-Aware Transcript Quantification from Long Read RNA-Seq data
|
2025-02-20 |
|
hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2025-02-20 |
|
r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-02-20 |
|
dajin2
|
public |
One-step genotyping tools for targeted long-read sequencing
|
2025-02-20 |
|
vcflib
|
public |
Command-line tools for manipulating VCF files.
|
2025-02-19 |
|
shapeit5
|
public |
Fast and accurate method for estimation of haplotypes (phasing)
|
2025-02-19 |
|
perl-template-toolkit
|
public |
Comprehensive template processing system.
|
2025-02-19 |
|
mlstdb
|
public |
A Python package to update and manage the MLST database for the MLST tool.
|
2025-02-19 |
|
hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
|
2025-02-19 |
|
vcfexpress
|
public |
expressions on VCFs
|
2025-02-19 |
|
libssw
|
public |
An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications.
|
2025-02-19 |
|
consent
|
public |
Scalable long read self-correction and assembly polishing with multiple sequence alignment
|
2025-02-19 |
|
quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2025-02-19 |
|
perl-specio
|
public |
Type constraints and coercions for Perl
|
2025-02-19 |
|
genmap
|
public |
Ultra-fast computation of genome mappability.
|
2025-02-19 |
|
pupmapper
|
public |
Tool & python package for calculating genome wide pileup mappability.
|
2025-02-19 |
|
seqlib
|
public |
C++ interface to HTSlib, BWA-MEM and Fermi.
|
2025-02-18 |
|
genomad
|
public |
Identification of mobile genetic elements.
|
2025-02-18 |
