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ucsc-bigbedinfo
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public |
Show information about a bigBed file.
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2025-06-26 |
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ucsc-bedclip
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public |
Remove lines from bed file that refer to off-chromosome locations.
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2025-06-26 |
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ucsc-pslprottornacoords
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public |
Convert protein alignments to RNA coordinates.
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2025-06-26 |
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ucsc-pslsplicejunctions
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public |
Extract splice junctions from a PSL file.
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2025-06-26 |
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fasta_ushuffle
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public |
a wrapper for uShuffle
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2025-06-26 |
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ucsc-hggcpercent
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public |
Calculate GC Percentage in 20kb windows.
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2025-06-26 |
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ucsc-genepredtobiggenepred
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public |
Converts genePred or genePredExt to bigGenePred input (bed format with extra fields).
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2025-06-26 |
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ucsc-genepredcheck
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public |
Validate genePred files or tables.
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2025-06-26 |
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ucsc-bigbedtobed
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public |
Convert from bigBed to ascii bed format.
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2025-06-26 |
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binette
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public |
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
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2025-06-26 |
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flexbar
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public |
Flexible barcode and adapter removal
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2025-06-26 |
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rpbp
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public |
Ribosome profiling with Bayesian predictions (Rp-Bp)
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2025-06-26 |
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r-bascule
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public |
Bayesian inference and clustering of mutational signatures leveraging biological priors
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2025-06-26 |
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famseq
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public |
Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi A, Davis RW, Huff V, Scharfe C, Wang W. Rare variant detection using family-based sequencing analysis. Proceedings of the National Academy of Sciences. 2013 Mar 5;110(10):3985-90
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2025-06-26 |
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expansionhunterdenovo
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public |
ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs).
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2025-06-26 |
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ucsc-genepredtogtf
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public |
Convert genePred table or file to gtf.
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2025-06-26 |
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ucsc-fatrans
|
public |
Translate DNA .fa file to peptide.
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2025-06-26 |
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ucsc-oligomatch
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public |
find perfect matches in sequence.
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2025-06-26 |
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ucsc-pslpostarget
|
public |
flip psl strands so target is positive and implicit
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2025-06-26 |
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ucsc-gaptolift
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public |
Create lift file from gap table(s).
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2025-06-26 |
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ucsc-psltochain
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public |
Convert psl records to chain records.
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2025-06-26 |
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ucsc-psltobed
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public |
Transform a psl format file to a bed format file.
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2025-06-26 |
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ucsc-pslsort
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public |
Merge and sort psCluster .psl output files.
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2025-06-26 |
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ucsc-pslsortacc
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public |
Remove chain-breaking alignments from chains that break nested chains.
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2025-06-26 |
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ucsc-pslstats
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public |
Collect statistics from a psl file.
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2025-06-26 |
