|
fastq-and-furious
|
public |
Fast handling of FASTQ files
|
2025-06-27 |
|
ucsc-psltobigpsl
|
public |
Converts psl to bigPsl input (bed format with extra fields).
|
2025-06-27 |
|
ucsc-fetchchromsizes
|
public |
Used to fetch chrom.sizes information from UCSC for the given <db>.
|
2025-06-27 |
|
ucsc-tolower
|
public |
Convert upper case to lower case in file. Leave other chars alone.
|
2025-06-27 |
|
vpt-plugin-cellpose2
|
public |
Cellpose2 plugin for the Vizgen Post-processing Tool
|
2025-06-27 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-06-27 |
|
blastbesties
|
public |
Rapid discovery of reciprocal best blast pairs from BLAST output files.
|
2025-06-27 |
|
ucsc-matrixclustercolumns
|
public |
Group the columns of a matrix into clusters, and output a matrix with the same number of rows and generally much fewer columns. Combines columns by taking mean.
|
2025-06-27 |
|
argparse-tui
|
public |
Present your Argparse CLI as a Textual UI (TUI).
|
2025-06-27 |
|
ucsc-matrixmarkettotsv
|
public |
Convert matrix file from Matrix Market sparse matrix format to tab-separated-values.
|
2025-06-26 |
|
ucsc-matrixnormalize
|
public |
Normalize a matrix somehow - make it's columns or rows all sum to one or have vector length one.
|
2025-06-26 |
|
paidiverpy
|
public |
A library to preprocess image data.
|
2025-06-26 |
|
gpatch
|
public |
Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
|
2025-06-26 |
|
nail
|
public |
Profile Hidden Markov Model (pHMM) biological sequence alignment tool
|
2025-06-26 |
|
cosigt
|
public |
Cosigt (COsine SImilarity-based GenoTyper)
|
2025-06-26 |
|
vpt-core
|
public |
Core components for the Vizgen Post-processing Tool
|
2025-06-26 |
|
pydeseq2
|
public |
A python implementation of DESeq2.
|
2025-06-26 |
|
marti
|
public |
Metagenomic Analysis in Real Time
|
2025-06-26 |
|
masurca
|
public |
MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software.
|
2025-06-26 |
|
ucsc-pslsplitontarget
|
public |
Split psl files into one per target.
|
2025-06-26 |
|
varlociraptor
|
public |
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
|
2025-06-26 |
|
ucsc-bigwigaverageoverbed
|
public |
Compute average score of big wig over each bed, which may have introns.
|
2025-06-26 |
|
ucsc-bedsort
|
public |
Sort a .bed file by chrom,chromStart.
|
2025-06-26 |
|
ucsc-xmlcat
|
public |
Concatenate xml files together, stuffing all records inside a single outer tag.
|
2025-06-26 |
|
ucsc-bigbedsummary
|
public |
Extract summary information from a bigBed file.
|
2025-06-26 |
