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ucsc-gff3togenepred
|
public |
Convert a GFF3 file to a genePred file.
|
2025-06-26 |
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ucsc-pslcheck
|
public |
Validate PSL files.
|
2025-06-25 |
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ucsc-nibfrag
|
public |
Extract part of a nib file as .fa (all bases/gaps lower case by default).
|
2025-06-25 |
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pod5
|
public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2025-06-25 |
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ucsc-bigwigtowig
|
public |
Convert bigWig to wig. This will keep more of the same structure of the original wig than bigWigToBedGraph does, but still will break up large stepped sections into smaller ones.
|
2025-06-25 |
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celltypist
|
public |
A tool for semi-automatic cell type annotation.
|
2025-06-25 |
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lib-pod5
|
public |
Python bindings for the POD5 file format.
|
2025-06-25 |
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poseidon-trident
|
public |
A tool (trident) to work with modular genotype databases formatted using Poseidon.
|
2025-06-25 |
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crossmap
|
public |
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies.
|
2025-06-25 |
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ltr_retriever
|
public |
Sensitive and accurate identification of LTR retrotransposons
|
2025-06-25 |
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voronota
|
public |
Compute Voronoi diagram vertices for macromolecular structures
|
2025-06-25 |
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eklipse
|
public |
eKLIPse is a sensitive and specific tool allowing the detection and quantification of large mtDNA rearrangements.
|
2025-06-25 |
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dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
|
2025-06-25 |
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beav
|
public |
beav: Bacterial genome and mobile element annotation pipeline
|
2025-06-25 |
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demultiplex
|
public |
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes
|
2025-06-25 |
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shortcut
|
public |
ShortCut Small RNA-seq data trimmer and quality control tool
|
2025-06-25 |
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lepwrap
|
public |
The Snakemake pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring+orienting genome assemblies.
|
2025-06-25 |
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mi-pimento
|
public |
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants.
|
2025-06-25 |
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pybascule
|
public |
Bayesian NMF signatures deconvolution and DP clustering.
|
2025-06-25 |
|
strainr2
|
public |
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities using metagenomic sequencing reads
|
2025-06-25 |
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ucsc-fasplit
|
public |
Split an fa file into several files.
|
2025-06-25 |
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ucsc-fasomerecords
|
public |
Extract multiple fa records.
|
2025-06-25 |
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ucsc-bigwigsummary
|
public |
Extract summary information from a bigWig file.
|
2025-06-25 |
|
learnmsa
|
public |
learnMSA: Learning and Aligning large Protein Families
|
2025-06-25 |
|
kneaddata
|
public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
|
2025-06-25 |
