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lrge
|
public |
Genome size estimation from long read overlaps
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2025-03-25 |
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genera
|
public |
Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra
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2025-03-25 |
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tipp
|
public |
TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data
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2025-03-25 |
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snp2cell
|
public |
A package for finding enriched regulatory networks from GWAS and single cell data.
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2025-03-25 |
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vgorient
|
public |
Scripts for processing mitochondrial graphs.
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2025-03-25 |
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ntsm
|
public |
ntsm - Nucleotide Sequence/Sample Matcher
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2025-03-25 |
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phyclone
|
public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
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2025-03-25 |
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absense
|
public |
abSENSE: a method to interpret undetected homologs
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2025-03-25 |
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hifiadapterfilt
|
public |
Convert .bam to .fastq and remove reads with remnant PacBio HiFi adapter sequences
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2025-03-25 |
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panta
|
public |
PanTA - pan-genome pipeline
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2025-03-25 |
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ega-cryptor
|
public |
EGA Cryptor v2.0.0 is a tool designed to encrypt files compliant with the European Genome-phenome Archive (EGA)
|
2025-03-25 |
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wipertools
|
public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
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2025-03-25 |
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mzspeclib
|
public |
HUPO-PSI Spectral library format
|
2025-03-25 |
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sprinter
|
public |
Single-cell Proliferation Rate Inference in Non-homogeneous Tumours through Evolutionary Routes (SPRINTER)
|
2025-03-25 |
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neptune-signature
|
public |
Neptune: Genomic Signature Discovery
|
2025-03-25 |
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search_ncbi
|
public |
A package for searching and processing NCBI data
|
2025-03-25 |
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snpick
|
public |
A fast and memory-efficient tool for SNP extraction from genomic alignments.
|
2025-03-25 |
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mzpaf
|
public |
HUPO-PSI Peptide peak annotation format
|
2025-03-25 |
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gretl
|
public |
gretl is a tool to compute a range of statistics on variation graphs in gfa format.
|
2025-03-25 |
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r-locuszoomr
|
public |
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
|
2025-03-25 |
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kestrel
|
public |
Mapping-free variant caller for short-read Illumina data
|
2025-03-25 |
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tttrlib
|
public |
A file format agnostic library for time-resolved imaging and spectroscopic data.
|
2025-03-25 |
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biobb_mem
|
public |
Biobb_mem is the Biobb module for membrane structure analysis.
|
2025-03-25 |
|
gzrt
|
public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover.
|
2025-03-25 |
|
lamps
|
public |
Liverpool Annotation of metabolites using Mass Spectrometry
|
2025-03-25 |
|
r-remapenrich
|
public |
Bioinformatics tools to compute statistical enrichment of geonomic regions for ReMap peaks
|
2025-03-25 |
|
minimac4
|
public |
Computationally efficient genotype imputation
|
2025-03-25 |
|
halfdeep
|
public |
Automated detection of intervals covered at half depth by sequenced reads.
|
2025-03-25 |
|
orthodb
|
public |
Interface to OrthoDB REST API.
|
2025-03-25 |
|
gaftools
|
public |
gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments in GAF format
|
2025-03-25 |
|
fc
|
public |
Accurate Assembly of Full-length Consensus for Viral Quasispecies.
|
2025-03-25 |
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bubblegun
|
public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
|
2025-03-25 |
|
rotate
|
public |
Simple program to rotate a circular sequence to start at a given position or string.
|
2025-03-25 |
|
reseek
|
public |
Protein structure alignment and search algorithm.
|
2025-03-25 |
|
ntstat
|
public |
a toolkit for statistical analysis of k-mer frequency and depth
|
2025-03-25 |
|
eagle2
|
public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
|
2025-03-25 |
|
meta-neuro
|
public |
Medial Tractography Analysis (MeTA)
|
2025-03-25 |
|
msa4u
|
public |
A simple visualisation tool for Multiple Sequence Alignment.
|
2025-03-25 |
|
amplici
|
public |
AmpliCI: Cluster amplicon sequences in a fastq file with or without UMIs.
|
2025-03-25 |
|
liana
|
public |
LIANA+: a one-stop-shop framework for cell-cell communication
|
2025-03-25 |
|
phenograph
|
public |
Graph-based clustering for high-dimensional single-cell data.
|
2025-03-25 |
|
stxtyper
|
public |
Accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
|
2025-03-25 |
|
jarvis3
|
public |
Improved encoder for genomic sequences.
|
2025-03-25 |
|
deepchopper-cli
|
public |
A CLI for Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
|
2025-03-25 |
|
pyscenic
|
public |
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.
|
2025-03-25 |
|
corneto
|
public |
CORNETO: A Unified Framework for Omics-Driven Network Inference
|
2025-03-25 |
|
cell2cell
|
public |
Inferring cell-cell interactions from transcriptomes with cell2cell
|
2025-03-25 |
|
coptr
|
public |
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
|
2025-03-25 |
|
deepchopper
|
public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
|
2025-03-25 |
|
libgff
|
public |
A simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase.
|
2025-03-25 |
