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popdel
|
public |
Fast structural deletion calling on population-scale short read paired-end germline WGS data.
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2025-09-09 |
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kaiju
|
public |
Fast and sensitive taxonomic classification for metagenomics
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2025-09-09 |
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groot
|
public |
A tool for resistome profiling of metagenomic samples.
|
2025-09-09 |
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emu-pca
|
public |
EM-PCA for Ultra-low Coverage Sequencing Data.
|
2025-09-09 |
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bioconvert
|
public |
Convert between bioinformatics formats
|
2025-09-08 |
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cell2cell
|
public |
Inferring cell-cell interactions from transcriptomes with cell2cell.
|
2025-09-08 |
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wiggletools
|
public |
The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank sum test, etc).
|
2025-09-08 |
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tgv
|
public |
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
|
2025-09-08 |
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pykofamsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2025-09-08 |
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finaletoolkit
|
public |
Extract cfDNA fragmentation features from sequencing data.
|
2025-09-08 |
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perl-set-object
|
public |
Unordered collections (sets) of Perl Objects
|
2025-09-08 |
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adapterremoval
|
public |
The AdapterRemoval v2 tool for merging and clipping reads.
|
2025-09-08 |
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vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2025-09-08 |
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sdm
|
public |
sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication.
|
2025-09-08 |
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perl-convert-binary-c
|
public |
Binary Data Conversion using C Types
|
2025-09-08 |
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perl-json-xs
|
public |
JSON serialising/deserialising, done correctly and fast
|
2025-09-08 |
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savvy
|
public |
Interface to various variant calling formats.
|
2025-09-08 |
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r-saige
|
public |
SAIGE is an R package with Scalable and Accurate Implementation of Generalized mixed model (Chen, H. et al. 2016)
|
2025-09-08 |
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nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2025-09-08 |
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compleasm
|
public |
Compleasm: a faster and more accurate reimplementation of BUSCO
|
2025-09-08 |
|
perl-extutils-parsexs
|
public |
Converts Perl XS code into C code.
|
2025-09-08 |
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biobb_mem
|
public |
Biobb_mem is the Biobb module for membrane structure analysis.
|
2025-09-08 |
|
biobb_analysis
|
public |
Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
|
2025-09-08 |
|
predictosaurus
|
public |
Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction.
|
2025-09-07 |
|
skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2025-09-07 |
