| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bamread | public | Read bam files quickly into dataframes in Python | 2025-09-09 |
| bfc | public | BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. | 2025-09-09 |
| velvet | public | Sequence Assembler for short reads | 2025-09-09 |
| callerpp | public | A simple consensus caller based on partial order alignment with spoa | 2025-09-09 |
| cutesv | public | cuteSV is a long-read based human genomic structural variation detection tool. | 2025-09-09 |
| fusioncatcher | public | Finder of Somatic Fusion Genes in RNA-seq data. | 2025-09-09 |
| cats-rf | public | Reference-free transcriptome assembly quality assessment tool. | 2025-09-09 |
| nextclade | public | Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement. | 2025-09-09 |
| flexiplex | public | flexiplex: the flexible demultiplexer (filter barcodes by whitelist and inflection point) | 2025-09-09 |
| grz-db | public | SQL models for grz-cli and grz-watchdog | 2025-09-09 |
| grzctl | public | Control CLI for GRZ administrators. | 2025-09-09 |
| samsum | public | A light-weight python package for summarizing sequence coverage from SAM and BAM files | 2025-09-09 |
| svdb | public | structural variant database software | 2025-09-09 |
| portcullis | public | Splice junction analysis and filtering from BAM files | 2025-09-09 |
| gbdraw | public | A genome diagram generator for microbes and organelles. | 2025-09-09 |
| locarna | public | Multiple alignment of RNAs | 2025-09-09 |
| rasusa | public | Randomly subsample sequencing reads or alignments | 2025-09-09 |
| pygtftk | public | The gtftk suite providing facilities to manipulate genomic annotations in gtf format. | 2025-09-09 |
| megalodon | public | Nanopore modified base and sequence variant detection. | 2025-09-09 |
| popdel | public | Fast structural deletion calling on population-scale short read paired-end germline WGS data. | 2025-09-09 |
| kaiju | public | Fast and sensitive taxonomic classification for metagenomics | 2025-09-09 |
| groot | public | A tool for resistome profiling of metagenomic samples. | 2025-09-09 |
| emu-pca | public | EM-PCA for Ultra-low Coverage Sequencing Data. | 2025-09-09 |
| bioconvert | public | Convert between bioinformatics formats | 2025-09-08 |
| cell2cell | public | Inferring cell-cell interactions from transcriptomes with cell2cell. | 2025-09-08 |
