| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pegas | public | PeGAS is a Snakemake pipeline for genome analysis | 2025-09-10 |
| nanomotif | public | Identifying methlyation motifs in nanopore data | 2025-09-10 |
| perl-mce | public | Many-Core Engine for Perl providing parallel processing capabilities | 2025-09-10 |
| perl-image-exiftool | public | ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files. | 2025-09-10 |
| sierra-local | public | sierra-local is a Python3 implementation of the Stanford HIVdb Sierra service for generating drug resistance predictions from HIV-1 sequences. | 2025-09-10 |
| phyling | public | A phylogenetic inference tool based on protein-coding genomic sequences | 2025-09-10 |
| 3seq | public | 3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal. | 2025-09-10 |
| addrg | public | No Summary | 2025-09-10 |
| rascaf | public | Scaffolding with RNA-seq read alignment. | 2025-09-10 |
| pathoscope | public | Species identification and strain attribution with unassembled sequencing data | 2025-09-10 |
| splicemap | public | Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy. | 2025-09-10 |
| hardklor | public | Analyze mass spectra | 2025-09-10 |
| longphase | public | LongPhase is an ultra-fast program for simultaneously co-phasing SNPs, small indels, large SVs, and (5mC) modifications for Nanopore and PacBio platforms. | 2025-09-10 |
| gxformat2 | public | Galaxy Workflow Format 2 Descriptions. | 2025-09-10 |
| fastdup | public | A Scalable Duplicate Marking Tool using Speculation-and-Test Mechanism. | 2025-09-10 |
| antismash | public | antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell. | 2025-09-09 |
| snakemake-interface-scheduler-plugins | public | This package provides a stable interface for interactions between Snakemake and its scheduler plugins. | 2025-09-09 |
| biscuit | public | A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data. | 2025-09-09 |
| gempipe | public | gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models. | 2025-09-09 |
| trimadap | public | Fast but inaccurate adapter trimmer for Illumina reads. | 2025-09-09 |
| fermikit | public | No Summary | 2025-09-09 |
| fermi2 | public | Fermi2 focuses on the exploration of FMD-index as a graph. | 2025-09-09 |
| htsbox | public | HTSbox is a fork of early HTSlib. It is a collection of small experimental tools manipulating HTS-related files. | 2025-09-09 |
| longdust | public | Longdust identifies long highly repetitive STRs, VNTRs, satellite DNA and other low-complexity regions (LCRs) in a genome. | 2025-09-09 |
| pangene | public | Pangene is a command-line tool to construct a pangenome gene graph. | 2025-09-09 |
