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r-aroma.core
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public |
Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
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2025-08-19 |
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esviritu
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public |
Read mapping pipeline for detection and measurement of human and animal virus pathogens from short read metagenomic environmental or clinical samples.
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2025-08-18 |
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folddisco
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public |
Folddisco: fast indexing and search of discontinuous motifs in protein structures
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2025-08-18 |
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krepp
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public |
A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement of metagenomic samples.
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2025-08-18 |
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excludonfinder
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public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data.
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2025-08-18 |
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r-signac
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public |
A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis.
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2025-08-18 |
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ultraplex
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public |
An all-in-one software package for processing and demultiplexing fastq files.
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2025-08-18 |
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perl-term-detect-software
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public |
Detect terminal (emulator) software and its capabilities.
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2025-08-18 |
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gapmm2
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public |
gapmm2: gapped alignment using minimap2.
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2025-08-18 |
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squirrel
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public |
Some QUIck Reconstruction to Resolve Evolutionary Links.
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2025-08-18 |
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hcluster_sg
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public |
A tool for hierarchically clustering on a sparse graph
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2025-08-18 |
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nanocomp
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public |
Comparing runs of Oxford Nanopore sequencing data and alignments
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2025-08-18 |
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biocantor
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public |
Coordinate Maniuplation and Genome Annotation Data Model
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2025-08-18 |
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mzmine
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public |
Integrative analysis of multimodal mass spectrometry data.
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2025-08-18 |
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clumppling
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public |
Cluster matching and permutation program with integer linear programming.
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2025-08-18 |
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kractor
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public |
Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.
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2025-08-18 |
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sunbeamlib
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public |
A robust, extensible metagenomic sequencing pipeline.
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2025-08-18 |
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rdrpcatch
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public |
RNA virus RdRp sequence scanner.
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2025-08-18 |
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afragmenter
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public |
Schema-free, tunable protein domain segmentation tool for AlphaFold structures
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2025-08-18 |
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aardvark
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public |
A tool for sniffing out the differences in vari-Ants
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2025-08-18 |
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vg
|
public |
Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
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2025-08-18 |
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planemo
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public |
Command-line utilities to assist in building tools for the Galaxy project (https://galaxyproject.org).
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2025-08-18 |
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accusnv
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public |
High-accuracy SNV calling for bacterial isolates using AccuSNV.
|
2025-08-18 |
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matam
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public |
MATAM is a software dedicated to the fast and accurate targeted assembly of short reads.
|
2025-08-16 |
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intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
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2025-08-16 |
