| Package Name | Access | Summary | Updated |
|---|---|---|---|
| orthoflow | public | Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. | 2025-04-22 |
| hybracter | public | An automated long-read first bacterial genome assembly pipeline. | 2025-04-22 |
| gdmicro | public | GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data | 2025-04-22 |
| aspera-cli | public | Command Line Interface for IBM Aspera products. | 2025-04-22 |
| vcf2cytosure | public | Convert VCF with structural variations to CytoSure format | 2025-04-22 |
| neoloop | public | Predict neo-loops induced by structural variations | 2025-04-22 |
| scrnasim-toolz | public | Tools used by scRNAsim workflow. | 2025-04-22 |
| customtkinter | public | Create modern looking GUIs with Python | 2025-04-22 |
| seqstr | public | Lightweight tool to compile simple string input into long genomic sequences | 2025-04-22 |
| pythoncyc | public | A Python interface to Pathway Tools, 2019 update | 2025-04-22 |
| phytest | public | Quality control for phylogenetic pipelines using pytest | 2025-04-22 |
| trimnami | public | Read-trimming pipelines for multiple samples | 2025-04-22 |
| koverage | public | Read-coverage statistics pipelines for multiple samples | 2025-04-22 |
| kosudoku | public | kosudoku: a suite to rapidly create whole genome knockout collections for microorganisms | 2025-04-22 |
| assemblycomparator2 | public | assemblycomparator2: Compare prokaryotic genomic assemblies | 2025-04-22 |
| deepdirect | public | In silico approach to generate mutations for protein complexes towards a specified direction (increase/decrease) in binding affinity. | 2025-04-22 |
| mass2chem | public | Common utilities for interpreting mass spectrometry data | 2025-04-22 |
| jms-metabolite-services | public | conversion, search of metabolic models and metabolomics data | 2025-04-22 |
| metdatamodel | public | Data models for metabolomics | 2025-04-22 |
| cascade-config | public | Cascading configuration from the CLI and config files. | 2025-04-22 |
| gogstools | public | GenOuest tools for manipulating Official Gene Sets | 2025-04-22 |
| sharg | public | A modern argument parser for C++ tools. | 2025-04-22 |
| amplisim | public | Plain simple amplicon sequence simulator for in-silico genomic sequencing assays. | 2025-04-22 |
| cospar | public | A toolkit for dynamic inference of cell fate by integrating state and lineage information. | 2025-04-22 |
| phylornn | public | PhyloRNN | 2025-04-22 |
