| Package Name | Access | Summary | Updated |
|---|---|---|---|
| peaks2utr | public | A robust, parallelized Python CLI for annotating three_prime_UTR | 2025-04-22 |
| reneo | public | Reneo: Unraveling Viral Genomes from Metagenomes | 2025-04-22 |
| bedgovcf | public | A simple tool to convert BED files to VCF files | 2025-04-22 |
| tides-ml | public | Tool for ORF-calling and ORF-classification using ML approaches. | 2025-04-22 |
| mtm-align | public | Align multiple protein structures | 2025-04-22 |
| pytrf | public | a fast Python package for finding tandem repeat sequences | 2025-04-22 |
| orthofisher | public | Orthofisher is a broadly applicable tool for automated gene identification and retrieval. | 2025-04-22 |
| flopp | public | flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing. | 2025-04-22 |
| r-pspecterlib | public | Proteomics R package for matching peaks in digested and intact proteomics | 2025-04-22 |
| ucsc-chaincleaner | public | Remove chain-breaking alignments from chains that break nested chains. | 2025-04-22 |
| ucsc-chainscore | public | Remove chain-breaking alignments from chains that break nested chains. | 2025-04-22 |
| pysais | public | Suffix array computation with induced sorting algorithm. | 2025-04-22 |
| rmath4 | public | standalone Rmath library from R | 2025-04-22 |
| colabfold | public | ColabFold: making protein folding accessible to all | 2025-04-22 |
| phantasm-xenogi | public | xenoGI for PHANTASM | 2025-04-22 |
| pyrodigal-gv | public | A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code. | 2025-04-22 |
| isospecpy | public | Python interface to IsoSpec++ isotopic envelope calculator library | 2025-04-22 |
| mavis-config | public | Config validation for running MAVIS via Snakemake | 2025-04-22 |
| r-immucellaimouse | public | ImmuCellAI-mouse is a tool to estimate the abundance of 36 immune cells based on gene expression profile from RNA-Seq or microarray data. | 2025-04-22 |
| syngap | public | SynGAP: Synteny-based Gene structure Annotation Polisher | 2025-04-22 |
| taxmyphage | public | Script to assign taxonomy to a bacteriophage at the genus and species level | 2025-04-22 |
| auriclass | public | AuriClass is a tool for quickly predicting the clade of a Candida auris genome. | 2025-04-22 |
| rapgreen | public | Manipulate and annotate phylogenetic trees | 2025-04-22 |
| redundans | public | Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes. | 2025-04-22 |
| nii2dcm | public | nii2dcm: NIfTI to DICOM creation with Python | 2025-04-22 |
