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ecoprimers
|
public |
No Summary
|
2024-12-10 |
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slimm
|
public |
SLIMM - Species Level Identification of Microbes from Metagenomes
|
2024-12-10 |
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moods
|
public |
MOODS: Motif Occurrence Detection Suite
|
2024-12-10 |
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merlin
|
public |
MERLIN uses sparse trees to represent gene flow in pedigrees and is a fast pedigree analysis package
|
2024-12-10 |
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apt-probeset-summarize
|
public |
From Affymetrix Power Tools package. apt-probeset-summarize is program for analyzing expression arrays including 3' IVT and exon arrays. Supports background correction (MAS5,RMA), normalization (linear scaling, quantile, sketch), and summarization (PLIER, RMA, MAS5) methods.
|
2024-12-10 |
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sciphin
|
public |
Single-Cell mutation Identification via finite-sites Phylogenetic Inference
|
2024-12-10 |
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ucsc-bedextendranges
|
public |
extend length of entries in bed 6+ data to be at least the given length,
|
2024-12-10 |
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ucsc-bedtogenepred
|
public |
convert bed format files to genePred format
|
2024-12-10 |
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bed2gff
|
public |
BED-to-GFF3 converter that runs in parallel
|
2024-12-10 |
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ucsc-netsyntenic
|
public |
Add synteny info to net.
|
2024-12-10 |
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alignoth
|
public |
A tool for creating alignment plots from bam files
|
2024-12-10 |
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expressbetadiversity
|
public |
Taxon- and phylogenetic-based beta diversity measures.
|
2024-12-10 |
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r-gganatogram
|
public |
Create anatogram images for different organisms
|
2024-12-10 |
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cogtriangles
|
public |
low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
|
2024-12-10 |
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perl-math-random
|
public |
Random Number Generators
|
2024-12-10 |
|
gecko
|
public |
A pairwise genome comparison software for the detection of High-scoring Segment Pairs
|
2024-12-10 |
|
cmappy
|
public |
Assorted tools for interacting with .gct, .gctx, .grp, and .gmt files as well as other Connectivity Map (Broad Institute) data/tools
|
2024-12-10 |
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linearpartition
|
public |
Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
|
2024-12-10 |
|
virdig
|
public |
A de novo transcriptome assembler for coronavirus.
|
2024-12-10 |
|
biobb_io
|
public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
|
2024-12-10 |
|
glimmerhmm
|
public |
No Summary
|
2024-12-10 |
|
poa
|
public |
POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.
|
2024-12-10 |
|
blast-legacy
|
public |
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
|
2024-12-10 |
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equirep
|
public |
EquiRep is tool to identify tandem repeats.
|
2024-12-10 |
|
bwapy
|
public |
Bwapy provides python wrappers for bwa.
|
2024-12-10 |
|
pyprophet
|
public |
Python reimplementation of mProphet peak scoring
|
2024-12-10 |
|
consan
|
public |
Pairwise RNA structural alignment, both unconstrained and constrained on alignment pins.
|
2024-12-10 |
|
prank
|
public |
PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.
|
2024-12-10 |
|
parasail-python
|
public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
|
2024-12-10 |
|
pyjess
|
public |
Cython bindings and Python interface to JESS, a 3D template matching software.
|
2024-12-10 |
|
tinyalign
|
public |
A small Python module providing edit distance and Hamming distance computation.
|
2024-12-10 |
|
genbank
|
public |
Code to work with Genbank files
|
2024-12-10 |
|
hhsuite
|
public |
HH-suite3 for fast remote homology detection and deep protein annotation
|
2024-12-10 |
|
taxonomy
|
public |
Python and Rust library for loading, saving, and manipulating taxonomic trees
|
2024-12-10 |
|
pyseq-align
|
public |
Python interface for the seq-align C library
|
2024-12-10 |
|
cgranges
|
public |
cgranges is a small C library for genomic interval overlap queries
|
2024-12-10 |
|
reduce
|
public |
Reduce - tool for adding and correcting hydrogens in PDB files
|
2024-12-10 |
|
svdb
|
public |
structural variant database software
|
2024-12-10 |
|
odgi
|
public |
An optimized dynamic genome/graph implementation.
|
2024-12-10 |
|
plinkio
|
public |
A library for parsing plink genotype files
|
2024-12-10 |
|
sorted_nearest
|
public |
Find nearest interval.
|
2024-12-10 |
|
pytriangle
|
public |
A python interface to the 2D triangulation program TRIANGLE
|
2024-12-10 |
|
binchicken
|
public |
Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
|
2024-12-09 |
|
mdust
|
public |
No Summary
|
2024-12-09 |
|
mmft
|
public |
Max's minimal fasta toolkit
|
2024-12-09 |
|
gafpack
|
public |
Convert alignments to pangenome variation graphs to coverage maps
|
2024-12-09 |
|
starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
|
2024-12-09 |
|
kinex
|
public |
Kinex infers causal kinases from phosphoproteomics data.
|
2024-12-09 |
|
nanocomp
|
public |
Comparing runs of Oxford Nanopore sequencing data and alignments
|
2024-12-09 |
|
expam
|
public |
Metagenomic profiling using a reference phylogeny
|
2024-12-09 |
