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solexaqa
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public |
Quality statistics and visual representations for second-generation sequencing data
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2024-12-11 |
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sharg
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public |
A modern argument parser for C++ tools.
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2024-12-11 |
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biodiff
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public |
exact comparison of biological sequences
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2024-12-11 |
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seq-hasher
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public |
Compute hash digests for DNA sequences in a FASTA file, with support for circular permutations
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2024-12-11 |
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tr-trimmer
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public |
Identify and trim terminal repeats from sequences in FASTA files
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2024-12-11 |
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unitig-caller
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public |
Determines presence/absence of sequence elements in bacterial sequence data.
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2024-12-11 |
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bioconductor-mpra
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public |
Analyze massively parallel reporter assays
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2024-12-11 |
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pseqsid
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public |
Calculates pairwise sequence identity, similarity and normalized similarity
score of proteins in a multiple sequence alignment.
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2024-12-11 |
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pixelator
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public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
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2024-12-11 |
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exomiser-rest-prioritiser
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public |
Exomiser prioritiser REST API
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2024-12-11 |
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civicpy
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public |
CIViC variant knowledgebase analysis toolkit.
|
2024-12-11 |
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clark
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public |
Fast, accurate and versatile k-mer based classification system
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2024-12-10 |
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seqstats
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public |
Quick summary statistics on fasta/fastq(.gz) files
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2024-12-10 |
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roguenarok
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public |
Phylogenetics - algorithm for the identification of rogue taxa in a tree set.
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2024-12-10 |
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guidescan
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public |
GuideScan is a tool for genome-wide CRISPR guide RNA (gRNA) design and analysis in custom genomes.
|
2024-12-10 |
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sherpas
|
public |
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences.
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2024-12-10 |
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porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads
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2024-12-10 |
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wfa2-lib
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public |
Wavefront alignment algorithm library v2
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2024-12-10 |
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fermi-lite
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public |
Fermi-lite is a standalone C library as well as a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size.
|
2024-12-10 |
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sts-smctc
|
public |
A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms.
|
2024-12-10 |
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gecode
|
public |
Generic constraint development environment
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2024-12-10 |
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ucsc-liftover
|
public |
Move annotations from one assembly to another
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2024-12-10 |
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svaba
|
public |
Structural variation and indel detection by local assembly
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2024-12-10 |
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vargeno
|
public |
Fast SNP genotyping tool for whole genome sequence data and large SNP database.
|
2024-12-10 |
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treemix
|
public |
TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.
|
2024-12-10 |
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libgff
|
public |
A simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase.
|
2024-12-10 |
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minirmd
|
public |
Remove duplicate and near-duplicate reads
|
2024-12-10 |
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soapdenovo2-prepare
|
public |
SoapDenovo2 Data prepare module using assembled contig to do scaffold assembly
|
2024-12-10 |
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ucsc-beditemoverlapcount
|
public |
count number of times a base is overlapped by the
|
2024-12-10 |
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mindthegap
|
public |
MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. MindTheGap can also be used as a genome assembly finishing tool, it can fill the gaps between a set of input contigs without any a priori on their relative order and orientation.
|
2024-12-10 |
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ucsc-pslsort
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public |
Merge and sort psCluster .psl output files
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2024-12-10 |
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sumaclust
|
public |
Sumaclust clusters sequences in a way that is fast and exact at the same time, using the same clustering algorithm as UCLUST and CD-HIT. For more information see url.
|
2024-12-10 |
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wgatools
|
public |
A Rust library and tools for whole genome alignment files
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2024-12-10 |
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ldhelmet
|
public |
Software program for statistical inference of fine-scale crossover recombination rates from population genetic data.
|
2024-12-10 |
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cuttlefish
|
public |
Construction of the compacted de Bruijn graph efficiently
|
2024-12-10 |
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super_distance
|
public |
Supertree method with distances
|
2024-12-10 |
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r-pctgcdata
|
public |
Provides GC percentage of a 1 kilobase window at a genomic position for different builds of human and mouse genomes.
|
2024-12-10 |
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ucsc-chainscore
|
public |
Remove chain-breaking alignments from chains that break nested chains.
|
2024-12-10 |
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libgenome
|
public |
A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.
|
2024-12-10 |
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align_it
|
public |
Align-it is a tool to align molecules according to their pharmacophores. A pharmacophore is an abstract concept based on the specific interactions observed in drug-receptor interactions: hydrogen bonding, charge transfer, electrostatic and hydrophobic interactions.
|
2024-12-10 |
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idba_subasm
|
public |
Fork of IDBA with modifications to perform subassembly for the read cloud metagenomic assembler Athena
|
2024-12-10 |
|
ecoprimers
|
public |
No Summary
|
2024-12-10 |
|
slimm
|
public |
SLIMM - Species Level Identification of Microbes from Metagenomes
|
2024-12-10 |
|
moods
|
public |
MOODS: Motif Occurrence Detection Suite
|
2024-12-10 |
|
merlin
|
public |
MERLIN uses sparse trees to represent gene flow in pedigrees and is a fast pedigree analysis package
|
2024-12-10 |
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apt-probeset-summarize
|
public |
From Affymetrix Power Tools package. apt-probeset-summarize is program for analyzing expression arrays including 3' IVT and exon arrays. Supports background correction (MAS5,RMA), normalization (linear scaling, quantile, sketch), and summarization (PLIER, RMA, MAS5) methods.
|
2024-12-10 |
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sciphin
|
public |
Single-Cell mutation Identification via finite-sites Phylogenetic Inference
|
2024-12-10 |
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ucsc-bedextendranges
|
public |
extend length of entries in bed 6+ data to be at least the given length,
|
2024-12-10 |
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ucsc-bedtogenepred
|
public |
convert bed format files to genePred format
|
2024-12-10 |
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bed2gff
|
public |
BED-to-GFF3 converter that runs in parallel
|
2024-12-10 |
