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gambit
|
public |
Tool for rapid taxonomic identification of microbial pathogens
|
2024-12-04 |
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trust4
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public |
TCR and BCR assembly from bulk or single-cell RNA-seq data
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2024-12-04 |
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mashmap
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public |
A fast approximate aligner for long DNA sequences.
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2024-12-04 |
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alignlib-lite
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public |
Simple wrapper around alignlib C++ library for sequence alignment
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2024-12-04 |
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ntedit
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public |
Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation
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2024-12-03 |
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ntroot
|
public |
Ancestry inference from genomic data
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2024-12-03 |
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apscale
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public |
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data.
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2024-12-03 |
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liftover
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public |
A Python package for converting point coordinates between genome assemblies, inspired by pyliftover.
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2024-12-03 |
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sneakernet-qc
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public |
A QC pipeline for raw reads
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2024-12-03 |
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cell2cell
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public |
Inferring cell-cell interactions from transcriptomes with cell2cell
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2024-12-03 |
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cadd-scripts
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public |
CADD scripts release for offline scoring
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2024-12-03 |
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rotate
|
public |
Simple program to rotate a circular sequence to start at a given position or string.
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2024-12-03 |
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versionix
|
public |
Get version of any tools.
|
2024-12-03 |
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fastplong
|
public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
|
2024-12-03 |
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quota_anchor
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public |
Strand and WGD aware syntenic gene identification
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2024-12-03 |
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seqscreen
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public |
SeqScreen was created to sensitively assign taxonomic classifications, functional annotations, and Functions of Sequences of Concern (FunSoCs) to single, short DNA sequences or open reading frames.
|
2024-12-02 |
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fastp
|
public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
|
2024-12-02 |
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phanotate
|
public |
Phanotate gene caller for phages
|
2024-12-02 |
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strainge
|
public |
Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
|
2024-12-02 |
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gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2024-12-02 |
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unassigner
|
public |
Type strain identification for 16S reads
|
2024-12-02 |
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graphaligner
|
public |
Sequence to graph aligner for long reads
|
2024-12-02 |
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baitfisher
|
public |
No Summary
|
2024-12-02 |
|
hictkpy
|
public |
Python bindings for hictk: read and write .cool and .hic files directly from Python
|
2024-12-01 |
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ropebwt3
|
public |
Constructs the FM-index of a large DNA sequence set and searches for matches against the FM-index.
|
2024-12-01 |
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palantir
|
public |
Palantir for modeling continuous cell state and cell fate choices in single cell data
|
2024-12-01 |
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yacht
|
public |
YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI).
|
2024-11-29 |
|
perl-test-utf8
|
public |
handy utf8 tests
|
2024-11-29 |
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jalview
|
public |
Jalview is a free program for multiple sequence alignment editing, visualisation, analysis and figure generation.
|
2024-11-29 |
|
virsorter
|
public |
VirSorter2 -- A multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes
|
2024-11-29 |
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pytximport
|
public |
pytximport - gene count estimation from transcript-level quantification
|
2024-11-29 |
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pegas
|
public |
PeGAS is a Snakemake pipeline for genome analysis
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2024-11-29 |
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brawn
|
public |
A tool for handling repetitive insertions into sequence alignments.
|
2024-11-28 |
|
hicexplorer
|
public |
Set of programs to process, analyze and visualize Hi-C and capture Hi-C data
|
2024-11-28 |
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strelka
|
public |
Strelka calls somatic and germline small variants from mapped sequencing reads
|
2024-11-28 |
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repeatmodeler
|
public |
RepeatModeler is a de-novo repeat family identification and modeling package.
|
2024-11-28 |
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vclust
|
public |
Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.
|
2024-11-27 |
|
crisprme
|
public |
CRISPRme, tool package for CRISPR experiments assessment and analysis.
|
2024-11-27 |
|
clusty
|
public |
Clusty is a tool for large-scale data clustering.
|
2024-11-27 |
|
kmer-db
|
public |
Kmer-db is a fast and memory-efficient tool for estimating evolutionary distances.
|
2024-11-27 |
|
lz-ani
|
public |
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
|
2024-11-27 |
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spatialleiden
|
public |
Implementation of multiplex Leiden for analysis of spatial omics data.
|
2024-11-27 |
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cojac
|
public |
Command-line tools to analyse co-occurrence of mutations on amplicons.
|
2024-11-27 |
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arvados-python-client
|
public |
Python API for Arvados
|
2024-11-26 |
|
genera
|
public |
Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra
|
2024-11-25 |
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agc
|
public |
Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans).
|
2024-11-25 |
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cobs
|
public |
Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
|
2024-11-25 |
|
omamer
|
public |
OMAmer - tree-driven and alignment-free protein assignment to sub-families
|
2024-11-25 |
|
biobb_vs
|
public |
Biobb_vs is the Biobb module collection to perform virtual screening studies.
|
2024-11-25 |
|
damidseq_pipeline
|
public |
An automated pipeline for processing DamID sequencing datasets.
|
2024-11-25 |
