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rcx-tk
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public |
This package adjusts and cleans the metadata file provided by a user.
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2025-04-22 |
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eskrim
|
public |
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
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2025-04-22 |
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ctxcore
|
public |
Core functions for pycisTarget and the SCENIC tool suite.
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2025-04-22 |
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seacells
|
public |
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data.
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2025-04-22 |
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r-redeemr
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public |
R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling.
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2025-04-22 |
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r-scavenge
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public |
SCAVENGE (Single Cell Analysis of Variant Enrichment through Network propagation of GEnomic data) optimizes the inference of functional and genetic associations to specific cells at single-cell resolution.
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2025-04-22 |
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splitubam
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public |
Split one ubam into multiple, per line, fast
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2025-04-22 |
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r-gchromvar
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public |
R package for computing cell-type specific GWAS enrichments from Finemapping data and quantitative epigenomic data.
|
2025-04-22 |
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poolsnp
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public |
PoolSNP is a heuristic SNP caller, which uses an MPILEUP file and a reference genome in FASTA format as inputs.
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2025-04-22 |
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rapidshapes
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public |
RapidShapes computes a thermodynamic matcher (TDM), using a runtime heuristic for probabilistic shape analysis.
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2025-04-22 |
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r-epitrace
|
public |
Inference of cell age and phylogeny from single cell ATAC data.
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2025-04-22 |
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r-easylift
|
public |
A convenience package for converting between popular mouse & human builds.
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2025-04-22 |
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scrubby
|
public |
Read depletion/extraction and database cleaning using k-mer and alignment methods
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2025-04-22 |
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cmaple
|
public |
MAximum Parsimonious Likelihood Estimation in C/C++.
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2025-04-22 |
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pytximport
|
public |
pytximport - gene count estimation from transcript-level quantification
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2025-04-22 |
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jupiterplot
|
public |
Circos Assembly Consistency (Jupiter) plot
|
2025-04-22 |
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gia
|
public |
Genomic Interval Arithmetic (gia)
|
2025-04-22 |
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cassiopeia
|
public |
The Cython compiler for writing C extensions in the Python language.
|
2025-04-22 |
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rnaalishapes
|
public |
RNAalishapes is a tool for secondary structure prediction, using shape abstraction. Input is a multiple sequence alignment. Pseudoknots are not considered at all.
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2025-04-22 |
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palikiss
|
public |
pAliKiss predicts RNA secondary structures for fixed RNA multiple sequence alignments, with special attention for pseudoknotted structures.
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2025-04-22 |
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metacerberus-lite
|
public |
MetaCerberus with reduced dependencies: Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
|
2025-04-22 |
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r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
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2025-04-22 |
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gtdb_to_taxdump
|
public |
GTDB database utility scripts
|
2025-04-22 |
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segul
|
public |
An ultrafast and memory efficient tool for phylogenomics
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2025-04-22 |
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constava
|
public |
Calculate conformational states probability and variability from a protein structure ensemble
|
2025-04-22 |
