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plasnet
|
public |
Clustering, visualising and exploring plasmid networks
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2025-04-22 |
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snakeatac_env
|
public |
snakemake based ATACseq pipeline
|
2025-04-22 |
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clusty
|
public |
Clusty is a tool for large-scale data clustering.
|
2025-04-22 |
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rpsbproc
|
public |
RpsbProc, the post-RPSBLAST Processing Utility.
|
2025-04-22 |
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diphase
|
public |
A diploid genome phasing tool
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2025-04-22 |
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subset-bam
|
public |
A tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag.
|
2025-04-22 |
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scspectra
|
public |
Supervised discovery of interpretable gene programs from single-cell data.
|
2025-04-22 |
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neodisambiguate
|
public |
Disambiguate reads that were mapped to multiple references.
|
2025-04-22 |
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taseq
|
public |
Downstream analysis for targetted amplicon sequencing.
|
2025-04-22 |
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pacu_snp
|
public |
PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.
|
2025-04-22 |
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carpedeam
|
public |
CarpeDeam - A metagenomic assembler for heavily damaged ancient datasets
|
2025-04-22 |
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r-mfassignr
|
public |
The MFAssignR package was designed for multi-element molecular formula (MF)
assignment of ultrahigh resolution mass spectrometry measurements.
A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation,
and unambiguous formula selections are provided.
|
2025-04-22 |
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rcx-tk
|
public |
This package adjusts and cleans the metadata file provided by a user.
|
2025-04-22 |
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eskrim
|
public |
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
|
2025-04-22 |
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ctxcore
|
public |
Core functions for pycisTarget and the SCENIC tool suite.
|
2025-04-22 |
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seacells
|
public |
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data.
|
2025-04-22 |
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r-redeemr
|
public |
R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling.
|
2025-04-22 |
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r-scavenge
|
public |
SCAVENGE (Single Cell Analysis of Variant Enrichment through Network propagation of GEnomic data) optimizes the inference of functional and genetic associations to specific cells at single-cell resolution.
|
2025-04-22 |
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splitubam
|
public |
Split one ubam into multiple, per line, fast
|
2025-04-22 |
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r-gchromvar
|
public |
R package for computing cell-type specific GWAS enrichments from Finemapping data and quantitative epigenomic data.
|
2025-04-22 |
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poolsnp
|
public |
PoolSNP is a heuristic SNP caller, which uses an MPILEUP file and a reference genome in FASTA format as inputs.
|
2025-04-22 |
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rapidshapes
|
public |
RapidShapes computes a thermodynamic matcher (TDM), using a runtime heuristic for probabilistic shape analysis.
|
2025-04-22 |
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r-epitrace
|
public |
Inference of cell age and phylogeny from single cell ATAC data.
|
2025-04-22 |
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r-easylift
|
public |
A convenience package for converting between popular mouse & human builds.
|
2025-04-22 |
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scrubby
|
public |
Read depletion/extraction and database cleaning using k-mer and alignment methods
|
2025-04-22 |
