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perl-socket6
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public |
IPv6 related part of the C socket.h defines and structure manipulators
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2024-12-13 |
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ucsc-bigpsltopsl
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public |
convert bigPsl file to psl
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2024-12-13 |
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w4mclassfilter
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public |
Filter Workflow4Metabolomics feature list, optionally imputing NA values.
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2024-12-13 |
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sctools
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public |
SCTools is a suite of tools performing utility operations over single-cell samples
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2024-12-13 |
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popgen-entropy
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public |
This program is for inferring population structure from autopolyploid and mixed-ploidy individuals, similar to structure, but using genotype-likelihood data for low- to medium-coverage sequencing depth.
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2024-12-13 |
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selectfasta
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public |
FASTA or FASTQ select from a list of header names
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2024-12-13 |
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vcf-validator
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public |
EBI EVA - Validation tool for VCF file format compliance
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2024-12-13 |
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perl-digest-crc
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public |
Generic CRC functions
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2024-12-13 |
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ucsc-wigcorrelate
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public |
Produce a table that correlates all pairs of wigs.
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2024-12-13 |
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genodsp
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public |
General workbench for processing signals along genomic (chromosomal) intervals
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2024-12-13 |
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perl-perl-unsafe-signals
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public |
Allow unsafe handling of signals in selected blocks
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2024-12-13 |
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ucsc-hgfindspec
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public |
Create hgFindSpec table from trackDb.ra files.
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2024-12-13 |
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sfold
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public |
Software for Statistical Folding of Nucleic Acids
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2024-12-13 |
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fqtrim
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public |
fqtrim is a versatile stand-alone utility that can be used to trim adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' regions in reads from high-throughput next-generation sequencing machines.
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2024-12-13 |
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nucleosome_prediction
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public |
This tool allows you to submit a genomic sequence and to recieve a prediction of the nucleosomes positions on it,
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2024-12-13 |
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ucsc-ratolines
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public |
Output .ra file stanzas as single lines, with pipe-separated fields.
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2024-12-13 |
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fasta_ushuffle
|
public |
a wrapper for uShuffle
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2024-12-13 |
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art
|
public |
No Summary
|
2024-12-13 |
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kalign2
|
public |
Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences.
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2024-12-13 |
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ampliconsuite
|
public |
An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools.
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2024-12-13 |
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r-erah
|
public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
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2024-12-13 |
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gvcfgenotyper
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public |
A utility for merging and genotyping Illumina-style GVCFs.
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2024-12-13 |
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perl-acme-damn
|
public |
'Unbless' Perl objects.
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2024-12-13 |
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r-lme4qtl
|
public |
Linear mixed models (lme4) with flexible covariance structure for qtl and association analysis.
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2024-12-13 |
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pizzly
|
public |
Fast fusion detection using kallisto
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2024-12-13 |
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oligomap
|
public |
Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.
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2024-12-13 |
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starcode
|
public |
Starcode: sequence clustering based on all-pairs search
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2024-12-13 |
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nanoblaster
|
public |
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
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2024-12-13 |
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genometester4
|
public |
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
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2024-12-13 |
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ucsc-hgspeciesrna
|
public |
Create fasta file with RNA from one species
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2024-12-13 |
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dialign2
|
public |
DIALIGN multiple sequence alignment using various sources of external information
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2024-12-13 |
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ucsc-trfbig
|
public |
Mask tandem repeats on a big sequence file.
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2024-12-13 |
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ucsc-bedgraphtobigwig
|
public |
Convert a bedGraph file to bigWig format.
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2024-12-13 |
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fqzcomp
|
public |
Fqzcomp is a basic fastq compressor, designed primarily for high performance.
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2024-12-13 |
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ucsc-maffrag
|
public |
Extract maf sequences for a region from database
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2024-12-13 |
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meta-apo
|
public |
Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function
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2024-12-13 |
|
tidehunter
|
public |
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
|
2024-12-13 |
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epa-ng
|
public |
Massively parallel phylogenetic placement of genetic sequences
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2024-12-13 |
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btrim
|
public |
This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
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2024-12-13 |
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prosampler
|
public |
An ultra-fast motif finding program in large ChIP-seq datasets.
|
2024-12-13 |
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ucsc-genepredtomafframes
|
public |
create mafFrames tables from a genePreds
|
2024-12-13 |
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ncls
|
public |
Fast overlap datastructure.
|
2024-12-13 |
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ucsc-maffilter
|
public |
Filter out maf files. Output goes to standard out
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2024-12-13 |
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r-annotables
|
public |
Provides tables for converting and annotating Ensembl Gene IDs.
|
2024-12-13 |
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centrifuge-core
|
public |
Classifier for metagenomic sequences. Does not include evaluation scripts
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2024-12-13 |
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ucsc-pslrecalcmatch
|
public |
Recalculate match,mismatch,repMatch columns in psl file.
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2024-12-13 |
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ucsc-axtchain
|
public |
Chain together axt alignments.
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2024-12-13 |
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tttrlib
|
public |
A file format agnostic library for time-resolved imaging and spectroscopic data.
|
2024-12-13 |
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ucsc-parasol
|
public |
Parasol is the name given to the overall system for managing jobs on a computer cluster and to this specific command. This command is intended primarily for system administrators. The 'para' command is the primary command for users.
|
2024-12-13 |
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ucsc-twobitmask
|
public |
apply masking to a .2bit file, creating a new .2bit file
|
2024-12-13 |
