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truvari
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public |
Structural variant comparison tool for VCFs
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2025-01-10 |
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metabolabpy
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public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
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2025-01-10 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2025-01-10 |
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perl-experimental
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public |
Experimental features made easy
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2025-01-09 |
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prokbert
|
public |
ProkBERT is a genomic language model specifically designed for microbiome applications. It leverages the power of machine learning to decipher complex microbial interactions, predict functionalities, and uncover novel patterns in extensive datasets. The ProkBERT model family, built on transfer learning and self-supervised methodologies, capitalizes on the abundant genomic data available.
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2025-01-09 |
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r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
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2025-01-09 |
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influx_si
|
public |
Metabolic flux and concentration estimation based on stable isotope labeling
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2025-01-09 |
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resistify
|
public |
A resistance gene annotation tool.
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2025-01-09 |
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glean-gene
|
public |
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
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2025-01-09 |
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star
|
public |
An RNA-seq read aligner.
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2025-01-09 |
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r-scroshi
|
public |
scROSHI: robust supervised hierarchical identification of single cells
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2025-01-09 |
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caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
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2025-01-09 |
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perl-uri-db
|
public |
Database URIs
|
2025-01-09 |
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plothic
|
public |
Plot Whole genome Hi-C contact matrix heatmap
|
2025-01-09 |
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quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
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2025-01-09 |
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spagrn
|
public |
A comprehensive tool to infer TF-centered, spatial gene regulatory networks for the spatially resolved transcriptomics (SRT) data.
|
2025-01-09 |
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relecov-tools
|
public |
Tools for managing and processing of relecov data.
|
2025-01-09 |
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tir-learner
|
public |
An ensemble pipeline for terminal inverted repeat (TIR) transposable elements annotation.
|
2025-01-09 |
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immuneml
|
public |
immuneML is a software platform for machine learning analysis of immune receptor repertoires.
|
2025-01-09 |
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parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2025-01-09 |
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harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-01-08 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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gfaffix
|
public |
GFAffix identifies and collapses walk-preserving shared affixes in variation graphs
|
2025-01-08 |
|
falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
|
2025-01-08 |
|
sansa
|
public |
Structural variant annotation
|
2025-01-08 |
|
ibridges
|
public |
Package for accessing data and metadata on iRods servers.
|
2025-01-08 |
|
delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
|
2025-01-08 |
|
r-crbhits
|
public |
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R.
|
2025-01-08 |
|
ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2025-01-08 |
|
bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-01-08 |
|
bioconductor-genetonic
|
public |
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
|
2025-01-08 |
|
perl-config-general
|
public |
Generic Config Module
|
2025-01-08 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-01-08 |
|
isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-01-08 |
|
excludonfinder
|
public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data
|
2025-01-08 |
|
samrefiner
|
public |
A program for gathering variant information from a SAM formated files
|
2025-01-08 |
|
primalbedtools
|
public |
A collection of tools for working with primer.bed files
|
2025-01-08 |
|
hybpiper
|
public |
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
|
2025-01-08 |
|
simpleaf
|
public |
A rust framework to make using alevin-fry even simpler.
|
2025-01-07 |
|
gpatch
|
public |
Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
|
2025-01-07 |
|
parascopy
|
public |
Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
|
2025-01-07 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-01-07 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2025-01-07 |
|
biscuit
|
public |
A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data.
|
2025-01-07 |
|
splitcode
|
public |
Flexible parsing, interpretation, and editing of technical sequences
|
2025-01-07 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2025-01-07 |
|
suchtree
|
public |
A python library for doing fast, thread-safe computations on phylogenetic trees
|
2025-01-07 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-01-07 |
|
mumemto
|
public |
Finding maximal unique matches across pangenomes
|
2025-01-07 |
