| Package Name | Access | Summary | Updated |
|---|---|---|---|
| votuderep | public | A tool to dereplicate and filter vOTUs | 2025-10-17 |
| epicore | public | Compute core epitopes from multiple overlapping peptides. | 2025-10-17 |
| bifrost-httr | public | Pre-release version for testing purposes only | 2025-10-17 |
| artic | public | ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore. | 2025-10-17 |
| ska2 | public | SKA (Split Kmer Analysis) version 2. | 2025-10-17 |
| metaphlan | public | Metagenomic Phylogenetic Analysis. | 2025-10-17 |
| cmat | public | ClinVar Mapping and Annotation Toolkit. | 2025-10-17 |
| atol-bpa-datamapper | public | Map data from the BPA data portal for AToL's Genome Engine. | 2025-10-17 |
| bronko | public | bronko is an ultra-rapid mapping free variant caller for viral amplicon sequencing data | 2025-10-17 |
| bioconda-repodata-patches | public | Generate tweaks to index metadata, hosted separately from anaconda.org index. | 2025-10-17 |
| ymp | public | Create entire NGS pipelines with one command | 2025-10-16 |
| stringtie | public | StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome. | 2025-10-16 |
| emu | public | Emu is a relative abundance estimator for 16s genomic data. | 2025-10-16 |
| barcode-validator | public | A python package for structural and taxonomic validation of DNA barcode data | 2025-10-16 |
| nf-core | public | Python package with helper tools for the nf-core community. | 2025-10-16 |
| pybiolib | public | BioLib Python Client. | 2025-10-16 |
| alignoth | public | A tool for creating alignment plots from bam files. | 2025-10-16 |
| mist_typing | public | MiST is a rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller. | 2025-10-16 |
| gromacs_mddb | public | GROMACS is a versatile package to perform molecular dynamics. | 2025-10-16 |
| cagecleaner | public | Genomic redundancy removal tool for cblaster hit sets. | 2025-10-16 |
| iobrpy | public | Immuno-Oncology Biological Research using Python (IOBRpy) | 2025-10-16 |
| flexynesis | public | A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. | 2025-10-15 |
| nextclade | public | Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement. | 2025-10-15 |
| bioconductor-alabaster.matrix | public | Load and Save Artifacts from File | 2025-10-15 |
| bioconductor-alabaster.base | public | Save Bioconductor Objects To File | 2025-10-15 |
