pyslow5
|
public |
slow5lib Python binding
|
2024-10-02 |
perl-convert-binary-c
|
public |
Binary Data Conversion using C Types
|
2024-10-02 |
metacache
|
public |
MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.
|
2024-10-02 |
tissuumaps
|
public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
|
2024-10-02 |
savana
|
public |
SAVANA: a somatic structural variant caller for long-read data
|
2024-10-02 |
d4tools
|
public |
The D4 command line utility program
|
2024-10-02 |
phyloacc
|
public |
Bayesian estimation of substitution rate shifts in non-coding regions
|
2024-10-02 |
galaxy_sequence_utils
|
public |
Sequence Utilities from the Galaxy project
|
2024-10-02 |
strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2024-10-02 |
gappa
|
public |
Genesis Applications for Phylogenetic Placement Analysis
|
2024-10-02 |
nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2024-10-02 |
panacus
|
public |
panacus is a tool for computing counting statistics for GFA files
|
2024-10-02 |
hsdfinder
|
public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
|
2024-10-02 |
mhcflurry
|
public |
MHC Binding Predictor
|
2024-10-02 |
hsdecipher
|
public |
Pipeline for the downstream analysis of highly similar duplicate genes
|
2024-10-02 |
metabolabpy
|
public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
|
2024-10-02 |
nohuman
|
public |
Remove human reads from a sequencing run
|
2024-10-02 |
bambamc
|
public |
lightweight C implementation of name collating BAM file input and BAM file output
|
2024-10-02 |
open-cravat
|
public |
OpenCRAVAT - variant analysis toolkit
|
2024-10-01 |
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2024-10-01 |
python-hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
|
2024-10-01 |
afpdb
|
public |
A Numpy-based PDB structure manipulation package
|
2024-10-01 |
genomic_address_service
|
public |
Genomic Address Service: De novo clustering and cluster address assignment
|
2024-10-01 |
eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
|
2024-10-01 |
peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
minimizers
|
public |
Minimizers extraction from fasta files.
|
2024-10-01 |
psm-utils
|
public |
Common utilities for parsing and handling peptide-spectrum matches and search engine results.
|
2024-10-01 |
apscale
|
public |
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
|
2024-10-01 |
pyteomics
|
public |
A framework for proteomics data analysis.
|
2024-10-01 |
genmod
|
public |
Annotate genetic inheritance models in variant files
|
2024-10-01 |
sphae
|
public |
Phage toolkit
|
2024-10-01 |
olivar
|
public |
Olivar PCR tiling design
|
2024-10-01 |
pypints
|
public |
Peak Identifier for Nascent Transcripts Starts (PINTS)
|
2024-09-30 |
dbghaplo
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph.
|
2024-09-30 |
yahs
|
public |
YaHS, yet another Hi-C scaffolding tool.
|
2024-09-30 |
catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
|
2024-09-30 |
pybiolib
|
public |
BioLib Python Client
|
2024-09-30 |
cpstools
|
public |
CPStools is a package for analyzing chloroplast genome sequences.
|
2024-09-30 |
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2024-09-30 |
pytximport
|
public |
pytximport - gene count estimation from alignment-free quantification
|
2024-09-30 |
spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
|
2024-09-30 |
seqfu
|
public |
DNA sequence utilities
|
2024-09-30 |
slow5tools
|
public |
Toolkit for S/bLOW5 format
|
2024-09-30 |
agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
|
2024-09-30 |
r-diffcorr
|
public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
|
2024-09-30 |
blaze2
|
public |
Barcode identification from (Nanopore) Long reads for AnalyZing single-cell gene Expression.
|
2024-09-30 |
gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2024-09-30 |
ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2024-09-29 |