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bioconda / packages / r-ic10

Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

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Type Size Name Uploaded Downloads Labels
conda 99.0 kB | noarch/r-ic10-2.0.2-r44h3121a25_1.tar.bz2  2 months and 27 days ago 167 main
conda 98.0 kB | noarch/r-ic10-2.0.2-r43h3121a25_0.tar.bz2  7 months and 22 days ago 381 main
conda 98.4 kB | noarch/r-ic10-1.5-r43h3121a25_6.tar.bz2  1 year and 8 months ago 1276 main
conda 97.7 kB | noarch/r-ic10-1.5-r42h3121a25_5.tar.bz2  2 years and 4 months ago 633 main
conda 96.3 kB | noarch/r-ic10-1.5-r41h3121a25_4.tar.bz2  3 years and 9 months ago 1212 main
conda 96.1 kB | noarch/r-ic10-1.5-r40h3121a25_3.tar.bz2  3 years and 11 months ago 200 main
conda 96.0 kB | noarch/r-ic10-1.5-r40h6115d3f_2.tar.bz2  4 years and 10 months ago 228 main
conda 96.0 kB | noarch/r-ic10-1.5-r40h6115d3f_1.tar.bz2  4 years and 10 months ago 223 main
conda 95.4 kB | noarch/r-ic10-1.5-r36h6115d3f_0.tar.bz2  5 years and 6 months ago 286 main
conda 84.0 kB | osx-64/r-ic10-1.4.2-r36h6115d3f_2.tar.bz2  5 years and 7 months ago 3878 main
conda 83.7 kB | linux-64/r-ic10-1.4.2-r36h6115d3f_2.tar.bz2  5 years and 7 months ago 276 main
conda 83.4 kB | linux-64/r-ic10-1.4.2-r351h6115d3f_1.tar.bz2  6 years and 2 months ago 314 main gcc7
conda 83.4 kB | osx-64/r-ic10-1.4.2-r351h6115d3f_1.tar.bz2  6 years and 2 months ago 361 main gcc7
conda 82.7 kB | linux-64/r-ic10-1.4.2-r351h6115d3f_0.tar.bz2  6 years and 5 months ago 334 main cf201901
conda 58.8 kB | linux-64/r-ic10-1.4.2-r341h6115d3f_0.tar.bz2  6 years and 5 months ago 456 main cf201901
conda 83.1 kB | osx-64/r-ic10-1.4.2-r351h6115d3f_0.tar.bz2  6 years and 5 months ago 120 main cf201901
conda 59.2 kB | osx-64/r-ic10-1.4.2-r341h6115d3f_0.tar.bz2  6 years and 5 months ago 294 main cf201901
conda 55.3 kB | osx-64/r-ic10-1.1.3-r3.4.1_0.tar.bz2  7 years and 4 months ago 4328 main cf201901
conda 55.6 kB | linux-64/r-ic10-1.1.3-r3.4.1_0.tar.bz2  7 years and 4 months ago 782 main cf201901
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