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bioconda / packages / r-geneexpressionfromgeo

A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optionally) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>. More information can be found in the following manuscript: Davide Chicco, "geneExpressionFromGEO: an R package to facilitate data reading from Gene Expression Omnibus (GEO)". Microarray Data Analysis, Methods in Molecular Biology, volume 2401, chapter 12, pages 187-194, Springer Protocols, 2021, <doi:10.1007/978-1-0716-1839-4_12>.

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conda 50.6 kB | noarch/r-geneexpressionfromgeo-1.3-r44h3121a25_0.conda  2 months and 10 days ago 34 main
conda 46.8 kB | noarch/r-geneexpressionfromgeo-1.2-r44h3121a25_0.tar.bz2  10 months and 7 days ago 267 main
conda 45.7 kB | noarch/r-geneexpressionfromgeo-0.9-r44h3121a25_3.tar.bz2  1 year and 1 month ago 449 main
conda 45.3 kB | noarch/r-geneexpressionfromgeo-0.9-r43h3121a25_2.tar.bz2  2 years and 7 months ago 1170 main
conda 44.5 kB | noarch/r-geneexpressionfromgeo-0.9-r42h3121a25_1.tar.bz2  3 years and 3 months ago 663 main
conda 43.9 kB | noarch/r-geneexpressionfromgeo-0.9-r41h3121a25_0.tar.bz2  3 years and 7 months ago 407 main

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