About Anaconda Help Download Anaconda

Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command.

Type Size Name Uploaded Downloads Labels
conda 596.9 kB | noarch/r-biomartr-0.9.2-r41h3342da4_2.tar.bz2  3 years and 4 months ago 2079 main
conda 575.8 kB | noarch/r-biomartr-0.9.2-r40h3342da4_1.tar.bz2  3 years and 6 months ago 411 main
conda 592.9 kB | noarch/r-biomartr-0.9.2-r40h6115d3f_0.tar.bz2  3 years and 11 months ago 299 main

© 2024 Anaconda, Inc. All Rights Reserved. (v4.0.4) Legal | Privacy Policy