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Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command.

Type Size Name Uploaded Downloads Labels
conda 598.9 kB | noarch/r-biomartr-1.0.7-r44h3342da4_2.tar.bz2  9 months and 4 hours ago 575 main
conda 586.0 kB | noarch/r-biomartr-1.0.7-r43h3342da4_1.tar.bz2  1 year and 8 months ago 1154 main
conda 577.9 kB | noarch/r-biomartr-1.0.7-r43h3342da4_0.tar.bz2  1 year and 9 months ago 181 main
conda 575.6 kB | noarch/r-biomartr-1.0.6-r43h3342da4_1.tar.bz2  1 year and 9 months ago 1040 main
conda 579.8 kB | noarch/r-biomartr-1.0.6-r43h3342da4_0.tar.bz2  1 year and 10 months ago 202 main
conda 635.6 kB | noarch/r-biomartr-1.0.4-r43h3342da4_1.tar.bz2  2 years and 2 months ago 1396 main
conda 638.6 kB | noarch/r-biomartr-1.0.4-r42h3342da4_0.tar.bz2  2 years and 2 months ago 427 main
conda 635.7 kB | noarch/r-biomartr-1.0.3-r42h3342da4_0.tar.bz2  2 years and 3 months ago 1635 main
conda 635.0 kB | noarch/r-biomartr-1.0.2-r42h3342da4_1.tar.bz2  2 years and 10 months ago 2120 main
conda 617.7 kB | noarch/r-biomartr-1.0.2-r41h3342da4_0.tar.bz2  3 years and 6 months ago 1232 main
conda 596.9 kB | noarch/r-biomartr-0.9.2-r41h3342da4_2.tar.bz2  4 years and 3 months ago 2210 main
conda 575.8 kB | noarch/r-biomartr-0.9.2-r40h3342da4_1.tar.bz2  4 years and 5 months ago 489 main
conda 592.9 kB | noarch/r-biomartr-0.9.2-r40h6115d3f_0.tar.bz2  4 years and 10 months ago 375 main

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