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Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command.

Type Size Name Uploaded Downloads Labels
conda 598.9 kB | noarch/r-biomartr-1.0.7-r44h3342da4_2.tar.bz2  8 months and 11 days ago 526 main
conda 586.0 kB | noarch/r-biomartr-1.0.7-r43h3342da4_1.tar.bz2  1 year and 8 months ago 1143 main
conda 577.9 kB | noarch/r-biomartr-1.0.7-r43h3342da4_0.tar.bz2  1 year and 8 months ago 177 main
conda 575.6 kB | noarch/r-biomartr-1.0.6-r43h3342da4_1.tar.bz2  1 year and 8 months ago 1019 main
conda 579.8 kB | noarch/r-biomartr-1.0.6-r43h3342da4_0.tar.bz2  1 year and 9 months ago 198 main
conda 635.6 kB | noarch/r-biomartr-1.0.4-r43h3342da4_1.tar.bz2  2 years and 1 month ago 1375 main
conda 638.6 kB | noarch/r-biomartr-1.0.4-r42h3342da4_0.tar.bz2  2 years and 2 months ago 421 main
conda 635.7 kB | noarch/r-biomartr-1.0.3-r42h3342da4_0.tar.bz2  2 years and 3 months ago 1614 main
conda 635.0 kB | noarch/r-biomartr-1.0.2-r42h3342da4_1.tar.bz2  2 years and 9 months ago 2098 main
conda 617.7 kB | noarch/r-biomartr-1.0.2-r41h3342da4_0.tar.bz2  3 years and 6 months ago 1227 main
conda 596.9 kB | noarch/r-biomartr-0.9.2-r41h3342da4_2.tar.bz2  4 years and 2 months ago 2205 main
conda 575.8 kB | noarch/r-biomartr-0.9.2-r40h3342da4_1.tar.bz2  4 years and 5 months ago 484 main
conda 592.9 kB | noarch/r-biomartr-0.9.2-r40h6115d3f_0.tar.bz2  4 years and 9 months ago 370 main

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