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Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command.

Type Size Name Uploaded Downloads Labels
conda 586.0 kB | noarch/r-biomartr-1.0.7-r43h3342da4_1.tar.bz2  9 months and 18 days ago 744 main
conda 577.9 kB | noarch/r-biomartr-1.0.7-r43h3342da4_0.tar.bz2  10 months and 15 days ago 106 main
conda 575.6 kB | noarch/r-biomartr-1.0.6-r43h3342da4_1.tar.bz2  10 months and 16 days ago 646 main
conda 579.8 kB | noarch/r-biomartr-1.0.6-r43h3342da4_0.tar.bz2  11 months and 16 days ago 125 main
conda 635.6 kB | noarch/r-biomartr-1.0.4-r43h3342da4_1.tar.bz2  1 year and 3 months ago 1007 main
conda 638.6 kB | noarch/r-biomartr-1.0.4-r42h3342da4_0.tar.bz2  1 year and 3 months ago 299 main
conda 635.7 kB | noarch/r-biomartr-1.0.3-r42h3342da4_0.tar.bz2  1 year and 4 months ago 1243 main
conda 635.0 kB | noarch/r-biomartr-1.0.2-r42h3342da4_1.tar.bz2  1 year and 11 months ago 1718 main
conda 617.7 kB | noarch/r-biomartr-1.0.2-r41h3342da4_0.tar.bz2  2 years and 7 months ago 1140 main
conda 596.9 kB | noarch/r-biomartr-0.9.2-r41h3342da4_2.tar.bz2  3 years and 4 months ago 2079 main
conda 575.8 kB | noarch/r-biomartr-0.9.2-r40h3342da4_1.tar.bz2  3 years and 6 months ago 411 main
conda 592.9 kB | noarch/r-biomartr-0.9.2-r40h6115d3f_0.tar.bz2  3 years and 11 months ago 299 main

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