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Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command.

Type Size Name Uploaded Downloads Labels
conda 546.8 kB | noarch/r-biomartr-1.0.7-r45h3342da4_3.conda  2 months and 12 days ago 96 main
conda 598.9 kB | noarch/r-biomartr-1.0.7-r44h3342da4_2.tar.bz2  1 year and 4 months ago 1054 main
conda 586.0 kB | noarch/r-biomartr-1.0.7-r43h3342da4_1.tar.bz2  2 years and 4 months ago 1321 main
conda 577.9 kB | noarch/r-biomartr-1.0.7-r43h3342da4_0.tar.bz2  2 years and 5 months ago 228 main
conda 575.6 kB | noarch/r-biomartr-1.0.6-r43h3342da4_1.tar.bz2  2 years and 5 months ago 1300 main
conda 579.8 kB | noarch/r-biomartr-1.0.6-r43h3342da4_0.tar.bz2  2 years and 6 months ago 249 main
conda 635.6 kB | noarch/r-biomartr-1.0.4-r43h3342da4_1.tar.bz2  2 years and 10 months ago 1660 main
conda 638.6 kB | noarch/r-biomartr-1.0.4-r42h3342da4_0.tar.bz2  2 years and 10 months ago 478 main
conda 635.7 kB | noarch/r-biomartr-1.0.3-r42h3342da4_0.tar.bz2  2 years and 11 months ago 1899 main
conda 635.0 kB | noarch/r-biomartr-1.0.2-r42h3342da4_1.tar.bz2  3 years and 6 months ago 2405 main
conda 617.7 kB | noarch/r-biomartr-1.0.2-r41h3342da4_0.tar.bz2  4 years and 2 months ago 1283 main
conda 596.9 kB | noarch/r-biomartr-0.9.2-r41h3342da4_2.tar.bz2  4 years and 11 months ago 2255 main
conda 575.8 kB | noarch/r-biomartr-0.9.2-r40h3342da4_1.tar.bz2  5 years and 1 month ago 538 main
conda 592.9 kB | noarch/r-biomartr-0.9.2-r40h6115d3f_0.tar.bz2  5 years and 6 months ago 416 main

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