A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
panqc is a pan-genome quality control toolkit that evaluates and corrects for nucleotide redundancy in pan-genome analyses. The panqc Nucleotide Redundancy Correction (NRC) pipeline adjusts for redundancy at the DNA level within pan-genome estimates by comparing genes classified as absent at the amino acid level against their corresponding assemblies at the nucleotide level and by clustering genes using k-mer based nucleotide similarity metrics.
