SNP-IT: Whole genome SNP based identification of members of the Mycobacterium tuberculosis complex.
Whole genome SNP based identification of members of the Mycobacterium tuberculosis complex. Based on code originally written by Samuel Lipworth and turned into a package by Philip Fowler.
SNP-IT allows rapid Mycobacterial speciation of VCF or FASTA files aligned to NC000962 (H37rV).
