Downstream analysis tools for amplicon sequencing — filtering, ordination, phylogeny, networks
microscape provides downstream analysis tools for amplicon sequencing data, designed to work with papa2's output. Includes sequence table QC filtering, MIMARKS metadata loading, taxonomic renormalization, phylogenetic tree construction (MAFFT + NJ), Bray-Curtis ordination (t-SNE/PCA), SparCC-style correlation networks, and JSON export for visualization.
