ATLAS - Three commands to start analysing your metagenome data
Atlas is a easy to use metagenomic pipeline
Three commands to start analysing your metagenome data:
conda install -c bioconda -c conda-forge metagenome-atlas atlas init --db-dir databases path/to/fastq/files atlas run
All databases and dependencies are installed on the fly in the directory
You want to run these three commands on the example_data on the GitHub repo.
If you have more time, then we recommend you configure atlas according to your needs.
- check the
- edit the
- run atlas on any cluster system
For more details see documentation.