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bioconda / packages / metagenome-atlas 2.19.0

ATLAS - Three commands to start analysing your metagenome data

Installers

  • noarch v2.19.0
  • linux-64 v2.0.6

conda install

To install this package run one of the following:
conda install bioconda::metagenome-atlas

Description

Atlas is a easy to use metagenomic pipeline

Three commands to start analysing your metagenome data:

    mamba install -c bioconda -c conda-forge metagenome-atlas
    atlas init --db-dir databases path/to/fastq/files
    atlas run

All databases and dependencies are installed on the fly in the directory db-dir. You want to run these three commands on the example_data on the GitHub repo. If you have more time, then we recommend you configure atlas according to your needs. - check the samples.tsv - edit the config.yaml - run atlas on any cluster system For more details see documentation.


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