bioconda / packages / metagenome-atlas 2.6a2

ATLAS - Three commands to start analysing your metagenome data


conda install

  • linux-64  v2.0.6
  • noarch  v2.6a2
To install this package with conda run:
conda install -c bioconda metagenome-atlas


Atlas is a easy to use metagenomic pipeline

Three commands to start analysing your metagenome data:

    conda install -c bioconda -c conda-forge metagenome-atlas
    atlas init --db-dir databases path/to/fastq/files
    atlas run

All databases and dependencies are installed on the fly in the directory db-dir. You want to run these three commands on the example_data on the GitHub repo. If you have more time, then we recommend you configure atlas according to your needs. - check the samples.tsv - edit the config.yaml - run atlas on any cluster system For more details see documentation.

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