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JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts then searches for gene fusions. This package contains the wrappers jaffa-direct, jaffa-assembly, and jaffa-hybrid. You can pass the "refSeq" parameter in the environment variables JAFFA_REF_BASE. Otherwise, pass any paramters to the wrappers as you would to the bpipe JAFFA_{method} call in the manual.

Type Size Name Uploaded Downloads Labels
conda 33.7 kB | osx-64/jaffa-1.08-0.tar.bz2  7 years and 8 months ago 4129 main cf201901
conda 33.9 kB | linux-64/jaffa-1.08-0.tar.bz2  7 years and 8 months ago 719 main cf201901

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