JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts then searches for gene fusions. This package contains the wrappers jaffa-direct, jaffa-assembly, and jaffa-hybrid. You can pass the "refSeq" parameter in the environment variables JAFFA_REF_BASE. Otherwise, pass any paramters to the wrappers as you would to the bpipe JAFFA_{method} call in the manual.
https://anaconda.org/bioconda/jaffa/badges/version.svg
https://anaconda.org/bioconda/jaffa/badges/latest_release_date.svg
https://anaconda.org/bioconda/jaffa/badges/latest_release_relative_date.svg
https://anaconda.org/bioconda/jaffa/badges/platforms.svg
https://anaconda.org/bioconda/jaffa/badges/license.svg
https://anaconda.org/bioconda/jaffa/badges/downloads.svg