Identifies Multiple Peaks and Quantifies Transcripts (TAGseq / 3' mRNA-seq)
IMPAQT identifies and quantifies transcripts and isoforms with distinct 3' ends from TAGseq and 3' mRNA-seq data by clustering read ends (DBSCAN). It emits a GTF of identified transcripts and, optionally, a gene-level counts table when given a reference annotation.
