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bioconda / packages / gnk_fastasort 0.1.2

A package to generate a GenomeNote ordered TSV of a genome.

Installers

  • noarch v0.1.2

conda install

To install this package run one of the following:
conda install bioconda::gnk_fastasort

Description

This package uses can use either a SAMTOOLS FAIDX indexed genome or an API call to NCBI to retrieve a sequence report. This is then used to generate a preferred ordering of the genome as a TSV, which can then be used to re-order a pretextsnapshot or create a re-ordered fasta file using samtools faidx.


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