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Coverage inspector for targeted sequencing QC (hg38)

Installers

  • noarch v0.4.0

conda install

To install this package run one of the following:
conda install bioconda::covsnap

Description

covsnap computes per-target and per-exon depth metrics from BAM/CRAM files, producing an interactive HTML report with PASS/FAIL classifications and visual coverage summaries. Includes a cross-platform graphical interface (Tkinter) and supports gene symbols (single or comma-separated), genomic regions, and BED files as input. Ships with a bundled GENCODE v44 hg38 gene index — no internet or GTF files required at runtime.


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