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bioconda / packages / bioconductor-xbseq 1.22.0

Test for differential expression for RNA-seq data

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.12.0
  • linux-64 v1.12.0
  • noarch v1.22.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-xbseq
conda install bioconda/label/cf201901::bioconductor-xbseq
conda install bioconda/label/gcc7::bioconductor-xbseq

Description

We developed a novel algorithm, XBSeq, where a statistical model was established based on the assumption that observed signals are the convolution of true expression signals and sequencing noises. The mapped reads in non-exonic regions are considered as sequencing noises, which follows a Poisson distribution. Given measureable observed and noise signals from RNA-seq data, true expression signals, assuming governed by the negative binomial distribution, can be delineated and thus the accurate detection of differential expressed genes.


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