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bioconda / packages / bioconductor-uniquorn 2.22.0

Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v2.0.0
  • linux-64 v2.0.0
  • noarch v2.22.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-uniquorn
conda install bioconda/label/cf201901::bioconductor-uniquorn
conda install bioconda/label/gcc7::bioconductor-uniquorn

Description

'Uniquorn' enables users to identify cancer cell lines. Cancer cell line misidentification and cross-contamination reprents a significant challenge for cancer researchers. The identification is vital and in the frame of this package based on the locations/ loci of somatic and germline mutations/ variations. The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample (i.e. a single member/genotype/gt column in the vcf file).


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